miRNA display CGI

Results 1 - 13 of 13 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
13116	3'	-55	NC_003401.1	+	73305	0.65	0.942892
	Target:  5'- gCGcGCGUG-CCAaaGUGGAggguUGCCuGCCGa -3' miRNA:   3'- -GC-CGCAUaGGUagCACCU----AUGG-CGGC- -5'
13116	3'	-55	NC_003401.1	+	112683	0.65	0.942892
	Target:  5'- aGGUGUAggucUCUAgUGUGGAacACCGCCc -3' miRNA:   3'- gCCGCAU----AGGUaGCACCUa-UGGCGGc -5'
13116	3'	-55	NC_003401.1	+	119913	0.66	0.92813
	Target:  5'- uCGGCGUuucggCCGcaacccUCGcGGccGCCGCCGa -3' miRNA:   3'- -GCCGCAua---GGU------AGCaCCuaUGGCGGC- -5'
13116	3'	-55	NC_003401.1	+	18426	0.66	0.91651
	Target:  5'- gGGUGUcUCUuuuuauaGUCGUGGGggUACCGuuGg -3' miRNA:   3'- gCCGCAuAGG-------UAGCACCU--AUGGCggC- -5'
13116	3'	-55	NC_003401.1	+	124195	0.67	0.905088
	Target:  5'- uGGCGUGUaCAUUGUGGuguGUAUCaGCCu -3' miRNA:   3'- gCCGCAUAgGUAGCACC---UAUGG-CGGc -5'
13116	3'	-55	NC_003401.1	+	64693	0.67	0.905088
	Target:  5'- aGGCGcgccAUCCGUCuccccUGGcUACCGCCc -3' miRNA:   3'- gCCGCa---UAGGUAGc----ACCuAUGGCGGc -5'
13116	3'	-55	NC_003401.1	+	101480	0.68	0.863544
	Target:  5'- ----uUGUCCAUCGccUGGAggGCCGCCGc -3' miRNA:   3'- gccgcAUAGGUAGC--ACCUa-UGGCGGC- -5'
13116	3'	-55	NC_003401.1	+	85875	0.68	0.855856
	Target:  5'- cCGGUGUGUCCGcgCGUGuGcgcgcuCCGCCu -3' miRNA:   3'- -GCCGCAUAGGUa-GCAC-Cuau---GGCGGc -5'
13116	3'	-55	NC_003401.1	+	11852	0.68	0.847963
	Target:  5'- uCGGUGaccGUCUAUCGaGGGUggaccgagACCGCCGu -3' miRNA:   3'- -GCCGCa--UAGGUAGCaCCUA--------UGGCGGC- -5'
13116	3'	-55	NC_003401.1	+	120006	0.69	0.796731
	Target:  5'- cCGGCGgucugcccccGUCCcUgGUGGcgGCCGCCu -3' miRNA:   3'- -GCCGCa---------UAGGuAgCACCuaUGGCGGc -5'
13116	3'	-55	NC_003401.1	+	58737	0.71	0.720412
	Target:  5'- gGGUGgGUUUAacUCGUGGuAUGCCGCCa -3' miRNA:   3'- gCCGCaUAGGU--AGCACC-UAUGGCGGc -5'
13116	3'	-55	NC_003401.1	+	28200	0.79	0.318771
	Target:  5'- gCGGCgGUAUCCA-CGaUGGAUacGCCGCCGu -3' miRNA:   3'- -GCCG-CAUAGGUaGC-ACCUA--UGGCGGC- -5'
13116	3'	-55	NC_003401.1	+	28360	1.08	0.004053
	Target:  5'- gCGGCGUAUCCAUCGUGGAUACCGCCGc -3' miRNA:   3'- -GCCGCAUAGGUAGCACCUAUGGCGGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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