miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13117 3' -53.3 NC_003401.1 + 17322 0.66 0.96619
Target:  5'- --cUCACCCGCCUGCaaacgUUCaagGGcCACGg -3'
miRNA:   3'- guuAGUGGGUGGGCGca---AAG---UC-GUGC- -5'
13117 3' -53.3 NC_003401.1 + 12510 0.66 0.962808
Target:  5'- gAGUCGgCgaagACCCGCGUUUCGGUggugggcugGCGg -3'
miRNA:   3'- gUUAGUgGg---UGGGCGCAAAGUCG---------UGC- -5'
13117 3' -53.3 NC_003401.1 + 19016 0.66 0.962808
Target:  5'- -uAUCGCgaCACCCGCGUUguuugCGGaGCGu -3'
miRNA:   3'- guUAGUGg-GUGGGCGCAAa----GUCgUGC- -5'
13117 3' -53.3 NC_003401.1 + 112224 0.66 0.959197
Target:  5'- aAGUcCACCCccaGCUCGUGg--CGGCGCGu -3'
miRNA:   3'- gUUA-GUGGG---UGGGCGCaaaGUCGUGC- -5'
13117 3' -53.3 NC_003401.1 + 11904 0.66 0.955353
Target:  5'- aGGUCAUCCgACCgGUGccgCAGUACGa -3'
miRNA:   3'- gUUAGUGGG-UGGgCGCaaaGUCGUGC- -5'
13117 3' -53.3 NC_003401.1 + 90812 0.66 0.955353
Target:  5'- -uGUUGCCCggACUCGUGUUUCGGUcaaACGu -3'
miRNA:   3'- guUAGUGGG--UGGGCGCAAAGUCG---UGC- -5'
13117 3' -53.3 NC_003401.1 + 79952 0.66 0.95127
Target:  5'- uCAGaUACCCuGCCCGCcucgUCGGCGCc -3'
miRNA:   3'- -GUUaGUGGG-UGGGCGcaa-AGUCGUGc -5'
13117 3' -53.3 NC_003401.1 + 111830 0.66 0.95127
Target:  5'- aAAUCACCCACCCGU--UUCAa---- -3'
miRNA:   3'- gUUAGUGGGUGGGCGcaAAGUcgugc -5'
13117 3' -53.3 NC_003401.1 + 47306 0.67 0.942372
Target:  5'- -cAUCgAUCCGCUCGUGUcacaCGGCACGa -3'
miRNA:   3'- guUAG-UGGGUGGGCGCAaa--GUCGUGC- -5'
13117 3' -53.3 NC_003401.1 + 71059 0.67 0.942372
Target:  5'- ---aCugCCGCgCGCGUUUU-GCGCGu -3'
miRNA:   3'- guuaGugGGUGgGCGCAAAGuCGUGC- -5'
13117 3' -53.3 NC_003401.1 + 42581 0.67 0.937552
Target:  5'- ---aCGCCCGCCCaCGUUgCGGCGa- -3'
miRNA:   3'- guuaGUGGGUGGGcGCAAaGUCGUgc -5'
13117 3' -53.3 NC_003401.1 + 129410 0.67 0.932482
Target:  5'- -uGUCACCCAgCCaCGCGc--CAGCAgGa -3'
miRNA:   3'- guUAGUGGGU-GG-GCGCaaaGUCGUgC- -5'
13117 3' -53.3 NC_003401.1 + 118548 0.67 0.921587
Target:  5'- gGGUCgaACCCGCCgGCG--UCAGCGuCGc -3'
miRNA:   3'- gUUAG--UGGGUGGgCGCaaAGUCGU-GC- -5'
13117 3' -53.3 NC_003401.1 + 44387 0.68 0.915762
Target:  5'- uGAgggCACCCAUgCGCGUUaugucgUCGGcCACGc -3'
miRNA:   3'- gUUa--GUGGGUGgGCGCAA------AGUC-GUGC- -5'
13117 3' -53.3 NC_003401.1 + 41944 0.68 0.909687
Target:  5'- -uGUUACCCAggccuCCCGUGUUgugacUCAGCGgGa -3'
miRNA:   3'- guUAGUGGGU-----GGGCGCAA-----AGUCGUgC- -5'
13117 3' -53.3 NC_003401.1 + 108518 0.69 0.844267
Target:  5'- ---cCACCCACCaaCGUGUuuUUCAGuCGCGa -3'
miRNA:   3'- guuaGUGGGUGG--GCGCA--AAGUC-GUGC- -5'
13117 3' -53.3 NC_003401.1 + 104716 0.7 0.827335
Target:  5'- cCAAUCACCuuCACgUGCGcggCAGCGCGc -3'
miRNA:   3'- -GUUAGUGG--GUGgGCGCaaaGUCGUGC- -5'
13117 3' -53.3 NC_003401.1 + 124249 0.7 0.827335
Target:  5'- --uUCcCgCCGCCCGUGggUCaAGCACGg -3'
miRNA:   3'- guuAGuG-GGUGGGCGCaaAG-UCGUGC- -5'
13117 3' -53.3 NC_003401.1 + 58359 0.72 0.712603
Target:  5'- --uUUACCCACgCGCGUggCAGCAg- -3'
miRNA:   3'- guuAGUGGGUGgGCGCAaaGUCGUgc -5'
13117 3' -53.3 NC_003401.1 + 17712 0.72 0.692009
Target:  5'- ---cCGCCCGCUCGCGUUuacccacacggUCAGCggGCGa -3'
miRNA:   3'- guuaGUGGGUGGGCGCAA-----------AGUCG--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.