miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13117 5' -62.6 NC_003401.1 + 120773 0.66 0.578408
Target:  5'- aUGCGCACUaugcuggccuggaaGuGGGGGGCGgauGGGugauGUCg -3'
miRNA:   3'- -ACGCGUGA--------------C-CCCUCCGCau-CCCc---CAG- -5'
13117 5' -62.6 NC_003401.1 + 10823 0.66 0.570535
Target:  5'- aUGCGCguaUGGGGGGGCGUcgccuacGGcGaGGcGUCc -3'
miRNA:   3'- -ACGCGug-ACCCCUCCGCA-------UC-C-CC-CAG- -5'
13117 5' -62.6 NC_003401.1 + 132789 0.66 0.551948
Target:  5'- gGCGCGgagaccacCUuucGGGGcGGCGUGGGGGa-- -3'
miRNA:   3'- aCGCGU--------GA---CCCCuCCGCAUCCCCcag -5'
13117 5' -62.6 NC_003401.1 + 132530 0.66 0.532587
Target:  5'- gGCGCGC-GGcGcGGGGCGgccGGGGG-Cg -3'
miRNA:   3'- aCGCGUGaCC-C-CUCCGCau-CCCCCaG- -5'
13117 5' -62.6 NC_003401.1 + 67801 0.67 0.504023
Target:  5'- aGCuCAggGGGGAGGuCGgaucgugAGGGGGUa -3'
miRNA:   3'- aCGcGUgaCCCCUCC-GCa------UCCCCCAg -5'
13117 5' -62.6 NC_003401.1 + 132390 0.68 0.46159
Target:  5'- cGCGCGCcGGGccgcuuucgguucgcGGGGCc--GGGGGUCc -3'
miRNA:   3'- aCGCGUGaCCC---------------CUCCGcauCCCCCAG- -5'
13117 5' -62.6 NC_003401.1 + 125710 0.68 0.457988
Target:  5'- aGCGCcCUGGGaagcGGGGCaccGGGGGUg -3'
miRNA:   3'- aCGCGuGACCC----CUCCGcauCCCCCAg -5'
13117 5' -62.6 NC_003401.1 + 132700 0.69 0.381248
Target:  5'- cGCGCGCcgcggcuugUGGGGccccGGGCccgGGGGGcGUCg -3'
miRNA:   3'- aCGCGUG---------ACCCC----UCCGca-UCCCC-CAG- -5'
13117 5' -62.6 NC_003401.1 + 121156 0.7 0.350006
Target:  5'- cGgGCGC-GGGG-GGCGcGGGGGG-Cg -3'
miRNA:   3'- aCgCGUGaCCCCuCCGCaUCCCCCaG- -5'
13117 5' -62.6 NC_003401.1 + 132440 0.7 0.320629
Target:  5'- gGCGCGCgggcccGGGGGGCGcgcGGGGGa- -3'
miRNA:   3'- aCGCGUGac----CCCUCCGCau-CCCCCag -5'
13117 5' -62.6 NC_003401.1 + 28823 1.09 0.000553
Target:  5'- gUGCGCACUGGGGAGGCGUAGGGGGUCa -3'
miRNA:   3'- -ACGCGUGACCCCUCCGCAUCCCCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.