miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13118 3' -59.5 NC_003401.1 + 18565 0.69 0.550866
Target:  5'- -aCGCCACGguaCAGCuCCCUGGuguGGGCCGc -3'
miRNA:   3'- gcGCGGUGUa--GUCG-GGGGCU---UCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 118729 0.69 0.590449
Target:  5'- cCGCGCCGCuuggCGGCgcggcuuccuCCCCcAAGACCc -3'
miRNA:   3'- -GCGCGGUGua--GUCG----------GGGGcUUCUGGc -5'
13118 3' -59.5 NC_003401.1 + 74000 0.68 0.61044
Target:  5'- -cCGCCACAcUCaaAGCCaaaccgaaCCGGAGACCGc -3'
miRNA:   3'- gcGCGGUGU-AG--UCGGg-------GGCUUCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 42999 0.68 0.620462
Target:  5'- gGCGUCGCAgCAGggcuCCCUCGGAGACg- -3'
miRNA:   3'- gCGCGGUGUaGUC----GGGGGCUUCUGgc -5'
13118 3' -59.5 NC_003401.1 + 126653 0.68 0.619459
Target:  5'- aGCGCCacccaacaGCAUCagacgguAGCCCCCGu--GCCGu -3'
miRNA:   3'- gCGCGG--------UGUAG-------UCGGGGGCuucUGGC- -5'
13118 3' -59.5 NC_003401.1 + 42390 0.68 0.640525
Target:  5'- uGUGCCACuccucguacUCGGCCa-UGAGGGCCGg -3'
miRNA:   3'- gCGCGGUGu--------AGUCGGggGCUUCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 66546 0.67 0.660563
Target:  5'- uGCcuGCCGCAUucaCGGCCUuagcgCCGggGACCc -3'
miRNA:   3'- gCG--CGGUGUA---GUCGGG-----GGCuuCUGGc -5'
13118 3' -59.5 NC_003401.1 + 17646 0.67 0.660563
Target:  5'- gCGCGCCGCGUCcgcgucGCCgCCGGAauCCa -3'
miRNA:   3'- -GCGCGGUGUAGu-----CGGgGGCUUcuGGc -5'
13118 3' -59.5 NC_003401.1 + 132652 0.67 0.699323
Target:  5'- gGCGCCGCcgggcUCGGCCggaccggggcgcuCCCGGGagucGGCCGg -3'
miRNA:   3'- gCGCGGUGu----AGUCGG-------------GGGCUU----CUGGC- -5'
13118 3' -59.5 NC_003401.1 + 74178 0.67 0.704243
Target:  5'- uGCGCCGCGggCGGUCUCCGGuucgguuuggcuuugAGugUGg -3'
miRNA:   3'- gCGCGGUGUa-GUCGGGGGCU---------------UCugGC- -5'
13118 3' -59.5 NC_003401.1 + 43953 0.67 0.710128
Target:  5'- aCG-GUCGCAUCuuuGCgCCCaAAGACCGg -3'
miRNA:   3'- -GCgCGGUGUAGu--CGgGGGcUUCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 119945 0.68 0.600433
Target:  5'- uGCGCCGCcucCGGCCagauuggCGGAGGCCGu -3'
miRNA:   3'- gCGCGGUGua-GUCGGgg-----GCUUCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 16761 0.69 0.560696
Target:  5'- gGCGCgGCAUC-GCUCCUGGacaaacuugcAGGCCGu -3'
miRNA:   3'- gCGCGgUGUAGuCGGGGGCU----------UCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 81471 0.69 0.550866
Target:  5'- uGCGCgaGCAUCGGCUgCCaGGGGCCa -3'
miRNA:   3'- gCGCGg-UGUAGUCGGgGGcUUCUGGc -5'
13118 3' -59.5 NC_003401.1 + 27496 0.7 0.50262
Target:  5'- aGCGCCAC--UAGCgCCaGAAGACCa -3'
miRNA:   3'- gCGCGGUGuaGUCGgGGgCUUCUGGc -5'
13118 3' -59.5 NC_003401.1 + 132819 0.7 0.492247
Target:  5'- gGCGCCcCGggcccCGGCCCCCcucccggcggcgcGGAGACCa -3'
miRNA:   3'- gCGCGGuGUa----GUCGGGGG-------------CUUCUGGc -5'
13118 3' -59.5 NC_003401.1 + 43046 0.73 0.332879
Target:  5'- aCGCGUCACAcgagaUCAcgcaggaugcccGUCCCCGggGACUGu -3'
miRNA:   3'- -GCGCGGUGU-----AGU------------CGGGGGCuuCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 118098 0.76 0.230218
Target:  5'- gCGCGCCAcCAUgGGCCCCaGAuuuGGGCCGc -3'
miRNA:   3'- -GCGCGGU-GUAgUCGGGGgCU---UCUGGC- -5'
13118 3' -59.5 NC_003401.1 + 31277 0.79 0.151367
Target:  5'- aCGCGUucguuguCACAaUAGCCCCCGGAGACCc -3'
miRNA:   3'- -GCGCG-------GUGUaGUCGGGGGCUUCUGGc -5'
13118 3' -59.5 NC_003401.1 + 126564 0.66 0.758099
Target:  5'- aCGCGUCACAcCuGa-CCUGAAGGCCa -3'
miRNA:   3'- -GCGCGGUGUaGuCggGGGCUUCUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.