Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13118 | 3' | -59.5 | NC_003401.1 | + | 132514 | 0.67 | 0.670553 |
Target: 5'- gGCGCCGCGcCccgacGCCCCCcGGGcCCGg -3' miRNA: 3'- gCGCGGUGUaGu----CGGGGGcUUCuGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 17503 | 0.67 | 0.670553 |
Target: 5'- aCGCGgCGCGcgUGGCCCCCGGguucgugcuGGACUc -3' miRNA: 3'- -GCGCgGUGUa-GUCGGGGGCU---------UCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 17646 | 0.67 | 0.660563 |
Target: 5'- gCGCGCCGCGUCcgcgucGCCgCCGGAauCCa -3' miRNA: 3'- -GCGCGGUGUAGu-----CGGgGGCUUcuGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 66546 | 0.67 | 0.660563 |
Target: 5'- uGCcuGCCGCAUucaCGGCCUuagcgCCGggGACCc -3' miRNA: 3'- gCG--CGGUGUA---GUCGGG-----GGCuuCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 123369 | 0.67 | 0.660563 |
Target: 5'- --gGCCGCGgcgCGGCCCCUGGAccCCGu -3' miRNA: 3'- gcgCGGUGUa--GUCGGGGGCUUcuGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 122946 | 0.67 | 0.660563 |
Target: 5'- aGCgGgCACGgugguUCAGCCCCCGuucGCCGg -3' miRNA: 3'- gCG-CgGUGU-----AGUCGGGGGCuucUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 42390 | 0.68 | 0.640525 |
Target: 5'- uGUGCCACuccucguacUCGGCCa-UGAGGGCCGg -3' miRNA: 3'- gCGCGGUGu--------AGUCGGggGCUUCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 132384 | 0.68 | 0.639522 |
Target: 5'- cCGCGCCGCGcgccgggccgcuuUCGGUUCgCGggG-CCGg -3' miRNA: 3'- -GCGCGGUGU-------------AGUCGGGgGCuuCuGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 42999 | 0.68 | 0.620462 |
Target: 5'- gGCGUCGCAgCAGggcuCCCUCGGAGACg- -3' miRNA: 3'- gCGCGGUGUaGUC----GGGGGCUUCUGgc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 126653 | 0.68 | 0.619459 |
Target: 5'- aGCGCCacccaacaGCAUCagacgguAGCCCCCGu--GCCGu -3' miRNA: 3'- gCGCGG--------UGUAG-------UCGGGGGCuucUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 74000 | 0.68 | 0.61044 |
Target: 5'- -cCGCCACAcUCaaAGCCaaaccgaaCCGGAGACCGc -3' miRNA: 3'- gcGCGGUGU-AG--UCGGg-------GGCUUCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 119945 | 0.68 | 0.600433 |
Target: 5'- uGCGCCGCcucCGGCCagauuggCGGAGGCCGu -3' miRNA: 3'- gCGCGGUGua-GUCGGgg-----GCUUCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 118729 | 0.69 | 0.590449 |
Target: 5'- cCGCGCCGCuuggCGGCgcggcuuccuCCCCcAAGACCc -3' miRNA: 3'- -GCGCGGUGua--GUCG----------GGGGcUUCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 16761 | 0.69 | 0.560696 |
Target: 5'- gGCGCgGCAUC-GCUCCUGGacaaacuugcAGGCCGu -3' miRNA: 3'- gCGCGgUGUAGuCGGGGGCU----------UCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 18565 | 0.69 | 0.550866 |
Target: 5'- -aCGCCACGguaCAGCuCCCUGGuguGGGCCGc -3' miRNA: 3'- gcGCGGUGUa--GUCG-GGGGCU---UCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 17957 | 0.69 | 0.550866 |
Target: 5'- gGCGCaaaggaaauCAUCuacGCUCCCGggGACCc -3' miRNA: 3'- gCGCGgu-------GUAGu--CGGGGGCuuCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 81471 | 0.69 | 0.550866 |
Target: 5'- uGCGCgaGCAUCGGCUgCCaGGGGCCa -3' miRNA: 3'- gCGCGg-UGUAGUCGGgGGcUUCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 27496 | 0.7 | 0.50262 |
Target: 5'- aGCGCCAC--UAGCgCCaGAAGACCa -3' miRNA: 3'- gCGCGGUGuaGUCGgGGgCUUCUGGc -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 69703 | 0.7 | 0.50262 |
Target: 5'- gGCGCCGCAaCAGUaaaccacccuuUCCCG-GGACCGu -3' miRNA: 3'- gCGCGGUGUaGUCG-----------GGGGCuUCUGGC- -5' |
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13118 | 3' | -59.5 | NC_003401.1 | + | 132819 | 0.7 | 0.492247 |
Target: 5'- gGCGCCcCGggcccCGGCCCCCcucccggcggcgcGGAGACCa -3' miRNA: 3'- gCGCGGuGUa----GUCGGGGG-------------CUUCUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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