miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13118 5' -58.6 NC_003401.1 + 16346 0.66 0.742224
Target:  5'- -gCGGUUUcgcgucgucuACGguGACACCGACUCc- -3'
miRNA:   3'- aaGCCGAG----------UGCguCUGUGGCUGGGuu -5'
13118 5' -58.6 NC_003401.1 + 120478 0.66 0.728382
Target:  5'- -gCGGCUCACGgAGGCuuaauacgaacguCCGGCUUAAc -3'
miRNA:   3'- aaGCCGAGUGCgUCUGu------------GGCUGGGUU- -5'
13118 5' -58.6 NC_003401.1 + 17074 0.66 0.71236
Target:  5'- gUUCGGCaacaACGCGGACACCacgguGGCCa-- -3'
miRNA:   3'- -AAGCCGag--UGCGUCUGUGG-----CUGGguu -5'
13118 5' -58.6 NC_003401.1 + 107800 0.66 0.699209
Target:  5'- --aGGCUCGaugggccccgcgccCGguGGCGCgGACCCGGg -3'
miRNA:   3'- aagCCGAGU--------------GCguCUGUGgCUGGGUU- -5'
13118 5' -58.6 NC_003401.1 + 118373 0.67 0.692087
Target:  5'- -gCGGCUCggccugcggcgACGCuGACGCCggcggguucGACCCAu -3'
miRNA:   3'- aaGCCGAG-----------UGCGuCUGUGG---------CUGGGUu -5'
13118 5' -58.6 NC_003401.1 + 122094 0.67 0.681869
Target:  5'- -aCGGC-CGCGcCAGcCGCCGcACCCGc -3'
miRNA:   3'- aaGCCGaGUGC-GUCuGUGGC-UGGGUu -5'
13118 5' -58.6 NC_003401.1 + 119772 0.67 0.67161
Target:  5'- gUCGGCgaGCGCc-GCACCGgACCCAGu -3'
miRNA:   3'- aAGCCGagUGCGucUGUGGC-UGGGUU- -5'
13118 5' -58.6 NC_003401.1 + 118428 0.67 0.661317
Target:  5'- cUCGGUggcCGgGCAGAgGCCGGCCg-- -3'
miRNA:   3'- aAGCCGa--GUgCGUCUgUGGCUGGguu -5'
13118 5' -58.6 NC_003401.1 + 117885 0.67 0.661317
Target:  5'- gUUCGGCg-GCGguGGCACCG-CgCCAGc -3'
miRNA:   3'- -AAGCCGagUGCguCUGUGGCuG-GGUU- -5'
13118 5' -58.6 NC_003401.1 + 88834 0.68 0.630331
Target:  5'- -cCGGUUUACGCGGA--UCGACCCu- -3'
miRNA:   3'- aaGCCGAGUGCGUCUguGGCUGGGuu -5'
13118 5' -58.6 NC_003401.1 + 28990 0.68 0.609666
Target:  5'- -aCGGCUCGCGgGGGacuCGCgagCGGCCCAGa -3'
miRNA:   3'- aaGCCGAGUGCgUCU---GUG---GCUGGGUU- -5'
13118 5' -58.6 NC_003401.1 + 20249 0.69 0.568601
Target:  5'- aUUGGCUC-CGCGGugACCGuggugcuguccGCCCu- -3'
miRNA:   3'- aAGCCGAGuGCGUCugUGGC-----------UGGGuu -5'
13118 5' -58.6 NC_003401.1 + 9871 0.7 0.479429
Target:  5'- cUCGGCUCGaauaucucugcCGCAGACugCGcUCCAGc -3'
miRNA:   3'- aAGCCGAGU-----------GCGUCUGugGCuGGGUU- -5'
13118 5' -58.6 NC_003401.1 + 29257 1.03 0.002956
Target:  5'- cUUCGGCUCACGCAGACACCGACCCAAc -3'
miRNA:   3'- -AAGCCGAGUGCGUCUGUGGCUGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.