miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13119 3' -62.5 NC_003401.1 + 118021 0.66 0.608028
Target:  5'- cGUACCCAUCGgCCgCUC--UUUGGCGCc -3'
miRNA:   3'- -CGUGGGUAGCgGG-GGGccAGACCGUG- -5'
13119 3' -62.5 NC_003401.1 + 88356 0.66 0.588319
Target:  5'- uGCucCCCGUCGCCUCCCac---GGCGCc -3'
miRNA:   3'- -CGu-GGGUAGCGGGGGGccagaCCGUG- -5'
13119 3' -62.5 NC_003401.1 + 110742 0.66 0.568729
Target:  5'- -uGCCUAUaCGCCCCCCGaUCaUGG-ACg -3'
miRNA:   3'- cgUGGGUA-GCGGGGGGCcAG-ACCgUG- -5'
13119 3' -62.5 NC_003401.1 + 17507 0.66 0.558993
Target:  5'- gGCGCgCGUgGCCCCCgGGUucgugCUGG-ACu -3'
miRNA:   3'- -CGUGgGUAgCGGGGGgCCA-----GACCgUG- -5'
13119 3' -62.5 NC_003401.1 + 20364 0.67 0.543517
Target:  5'- -aACCCcacuucagacaggCGCCCCCUGGUCcugucaagagaGGCGCg -3'
miRNA:   3'- cgUGGGua-----------GCGGGGGGCCAGa----------CCGUG- -5'
13119 3' -62.5 NC_003401.1 + 121314 0.67 0.530092
Target:  5'- cGCGCCCcccgCGCCCCCCGcGcCcGcCGCg -3'
miRNA:   3'- -CGUGGGua--GCGGGGGGC-CaGaCcGUG- -5'
13119 3' -62.5 NC_003401.1 + 13104 0.67 0.520578
Target:  5'- uGCuACUCG-CGCCCCCCGGUCacguucaGGUu- -3'
miRNA:   3'- -CG-UGGGUaGCGGGGGGCCAGa------CCGug -5'
13119 3' -62.5 NC_003401.1 + 89618 0.67 0.511131
Target:  5'- uGCAaCCGUCGCCaaCCUGGcggccCUGGCAUa -3'
miRNA:   3'- -CGUgGGUAGCGGg-GGGCCa----GACCGUG- -5'
13119 3' -62.5 NC_003401.1 + 125700 0.67 0.501756
Target:  5'- gGCGgCCAUCaGCgCCCUGGgaagCggGGCACc -3'
miRNA:   3'- -CGUgGGUAG-CGgGGGGCCa---Ga-CCGUG- -5'
13119 3' -62.5 NC_003401.1 + 132844 0.68 0.447236
Target:  5'- cGCGCCCcgCGCCgggCCCCGccgaGGCGCc -3'
miRNA:   3'- -CGUGGGuaGCGG---GGGGCcagaCCGUG- -5'
13119 3' -62.5 NC_003401.1 + 85848 0.68 0.438469
Target:  5'- gGCuCCCAgcaggCGCCCCCUGGcUUGaCACa -3'
miRNA:   3'- -CGuGGGUa----GCGGGGGGCCaGACcGUG- -5'
13119 3' -62.5 NC_003401.1 + 132447 0.69 0.429802
Target:  5'- gGCGCCCggCGCgCgggCCCGGgg-GGCGCg -3'
miRNA:   3'- -CGUGGGuaGCGgG---GGGCCagaCCGUG- -5'
13119 3' -62.5 NC_003401.1 + 108433 0.69 0.388029
Target:  5'- cGCACUCGagGCacaccaccaCCCUCGGagCUGGCACg -3'
miRNA:   3'- -CGUGGGUagCG---------GGGGGCCa-GACCGUG- -5'
13119 3' -62.5 NC_003401.1 + 107785 0.7 0.379203
Target:  5'- cGCGCCCGguggCGCggaCCCGGgagcguggcgucuUCUGGCAUa -3'
miRNA:   3'- -CGUGGGUa---GCGgg-GGGCC-------------AGACCGUG- -5'
13119 3' -62.5 NC_003401.1 + 27764 0.7 0.349014
Target:  5'- uCAgCCucUGCCCCCCGcG-CUGGCGCg -3'
miRNA:   3'- cGUgGGuaGCGGGGGGC-CaGACCGUG- -5'
13119 3' -62.5 NC_003401.1 + 80158 0.71 0.334211
Target:  5'- cGCACCCAauaggCGCgCCuuGGcCUGGCcCa -3'
miRNA:   3'- -CGUGGGUa----GCGgGGggCCaGACCGuG- -5'
13119 3' -62.5 NC_003401.1 + 15949 0.71 0.334211
Target:  5'- cGCGCCCugauaGCCCCCCuGUCccucgGGCGu -3'
miRNA:   3'- -CGUGGGuag--CGGGGGGcCAGa----CCGUg -5'
13119 3' -62.5 NC_003401.1 + 132280 0.71 0.326983
Target:  5'- --cCCCGcgCGCCCCCCGGgcccgcgCgccgGGCGCc -3'
miRNA:   3'- cguGGGUa-GCGGGGGGCCa------Ga---CCGUG- -5'
13119 3' -62.5 NC_003401.1 + 30523 0.71 0.326983
Target:  5'- aCACCCAgaUCGCCCCaCCGGcgccucaacCUGGCc- -3'
miRNA:   3'- cGUGGGU--AGCGGGG-GGCCa--------GACCGug -5'
13119 3' -62.5 NC_003401.1 + 122077 0.71 0.325552
Target:  5'- cGCACCCG-CGCCCCCCGcUCcaacaacaucagGGcCGCa -3'
miRNA:   3'- -CGUGGGUaGCGGGGGGCcAGa-----------CC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.