Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13119 | 3' | -62.5 | NC_003401.1 | + | 30523 | 0.71 | 0.326983 |
Target: 5'- aCACCCAgaUCGCCCCaCCGGcgccucaacCUGGCc- -3' miRNA: 3'- cGUGGGU--AGCGGGG-GGCCa--------GACCGug -5' |
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13119 | 3' | -62.5 | NC_003401.1 | + | 122077 | 0.71 | 0.325552 |
Target: 5'- cGCACCCG-CGCCCCCCGcUCcaacaacaucagGGcCGCa -3' miRNA: 3'- -CGUGGGUaGCGGGGGGCcAGa-----------CC-GUG- -5' |
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13119 | 3' | -62.5 | NC_003401.1 | + | 84012 | 0.71 | 0.298569 |
Target: 5'- uGCAUCCG-CGCCCgguuccccauCCCGGUCaucuguguuucuaUGGCACc -3' miRNA: 3'- -CGUGGGUaGCGGG----------GGGCCAG-------------ACCGUG- -5' |
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13119 | 3' | -62.5 | NC_003401.1 | + | 123191 | 0.72 | 0.286064 |
Target: 5'- aGCACCCcUCGUCCUCCaGGg-UGGCAUu -3' miRNA: 3'- -CGUGGGuAGCGGGGGG-CCagACCGUG- -5' |
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13119 | 3' | -62.5 | NC_003401.1 | + | 30132 | 1.11 | 0.00045 |
Target: 5'- cGCACCCAUCGCCCCCCGGUCUGGCACa -3' miRNA: 3'- -CGUGGGUAGCGGGGGGCCAGACCGUG- -5' |
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13119 | 3' | -62.5 | NC_003401.1 | + | 118021 | 0.66 | 0.608028 |
Target: 5'- cGUACCCAUCGgCCgCUC--UUUGGCGCc -3' miRNA: 3'- -CGUGGGUAGCgGG-GGGccAGACCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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