miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13120 5' -61.5 NC_003401.1 + 30694 1.07 0.00106
Target:  5'- aACCCCGGUACCGGUCAGCCACCUGGAc -3'
miRNA:   3'- -UGGGGCCAUGGCCAGUCGGUGGACCU- -5'
13120 5' -61.5 NC_003401.1 + 119237 0.72 0.304152
Target:  5'- cGCaCCCGGUuaacGCCGGUgcCGGCCGCCaagagGGGc -3'
miRNA:   3'- -UG-GGGCCA----UGGCCA--GUCGGUGGa----CCU- -5'
13120 5' -61.5 NC_003401.1 + 125243 0.72 0.325128
Target:  5'- cGCCCaGGUACCGGccgUUGGCCcacCCUGGGa -3'
miRNA:   3'- -UGGGgCCAUGGCC---AGUCGGu--GGACCU- -5'
13120 5' -61.5 NC_003401.1 + 117008 0.7 0.410974
Target:  5'- uCCCCaGGUACCuaGGUCGGCaGCCUGu- -3'
miRNA:   3'- uGGGG-CCAUGG--CCAGUCGgUGGACcu -5'
13120 5' -61.5 NC_003401.1 + 64302 0.69 0.454374
Target:  5'- uGCCCCGGgaAUCGG-CAGCauCCUGGGa -3'
miRNA:   3'- -UGGGGCCa-UGGCCaGUCGguGGACCU- -5'
13120 5' -61.5 NC_003401.1 + 7505 0.68 0.518062
Target:  5'- gACCCCuacguGGUgACCGGaaCAGCCgggaccuuuaacgACCUGGAg -3'
miRNA:   3'- -UGGGG-----CCA-UGGCCa-GUCGG-------------UGGACCU- -5'
13120 5' -61.5 NC_003401.1 + 110391 0.68 0.528556
Target:  5'- cACCgCCGGUACCGcGUaacacgcgacCAGCCACCc--- -3'
miRNA:   3'- -UGG-GGCCAUGGC-CA----------GUCGGUGGaccu -5'
13120 5' -61.5 NC_003401.1 + 132567 0.68 0.528556
Target:  5'- gGCuCCCGaUGCCGGgCGGCCGCCgcccGGc -3'
miRNA:   3'- -UG-GGGCcAUGGCCaGUCGGUGGa---CCu -5'
13120 5' -61.5 NC_003401.1 + 126163 0.67 0.547829
Target:  5'- gGCCUCGGuUACCGGcCAggGCCAUCUcGAu -3'
miRNA:   3'- -UGGGGCC-AUGGCCaGU--CGGUGGAcCU- -5'
13120 5' -61.5 NC_003401.1 + 119959 0.67 0.554628
Target:  5'- aGCCUCGGUGCCGcugcGCCGCCUccggccagauuggcGGAg -3'
miRNA:   3'- -UGGGGCCAUGGCcaguCGGUGGA--------------CCU- -5'
13120 5' -61.5 NC_003401.1 + 14189 0.67 0.557549
Target:  5'- gGCgCCGGaGCCGuUCAGCCGCCa--- -3'
miRNA:   3'- -UGgGGCCaUGGCcAGUCGGUGGaccu -5'
13120 5' -61.5 NC_003401.1 + 132681 0.67 0.557549
Target:  5'- gGCCCCGGgcCCGGggggCGucggggcgcggcGCCGCCgGGc -3'
miRNA:   3'- -UGGGGCCauGGCCa---GU------------CGGUGGaCCu -5'
13120 5' -61.5 NC_003401.1 + 104893 0.67 0.596857
Target:  5'- aACCCCGGUuCCGa-CGGCCcccggUCUGGAa -3'
miRNA:   3'- -UGGGGCCAuGGCcaGUCGGu----GGACCU- -5'
13120 5' -61.5 NC_003401.1 + 115772 0.67 0.596857
Target:  5'- cACCCCGGaGCCGaGcCcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG-----------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 115453 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116156 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116220 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116284 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116348 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5'
13120 5' -61.5 NC_003401.1 + 116412 0.66 0.606761
Target:  5'- cACCCCGGaGCCGaGcCgcccccacccggAGCCACCccGGAg -3'
miRNA:   3'- -UGGGGCCaUGGC-CaG------------UCGGUGGa-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.