miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13121 5' -49.3 NC_003401.1 + 106302 0.7 0.94303
Target:  5'- --gGUCCGGGCAUCACguaaaacGGCCUGCu -3'
miRNA:   3'- uuaCGGGUUUGUAGUGau-----UUGGGCGu -5'
13121 5' -49.3 NC_003401.1 + 106709 0.67 0.985494
Target:  5'- gAGUGCucaCCGAACc-CGCcAAACCCGCAa -3'
miRNA:   3'- -UUACG---GGUUUGuaGUGaUUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 107987 0.7 0.949624
Target:  5'- cGUGCUCAAgGCGUCcCUGAacgauuggcuccuuaACCCGCAa -3'
miRNA:   3'- uUACGGGUU-UGUAGuGAUU---------------UGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 108300 0.69 0.964183
Target:  5'- cGUGCCCuguuuGGCGUCGCcGGACUgCGCGa -3'
miRNA:   3'- uUACGGGu----UUGUAGUGaUUUGG-GCGU- -5'
13121 5' -49.3 NC_003401.1 + 109214 0.66 0.99371
Target:  5'- --aGCCCGuACGUCACaAAACacaCGUAg -3'
miRNA:   3'- uuaCGGGUuUGUAGUGaUUUGg--GCGU- -5'
13121 5' -49.3 NC_003401.1 + 110368 0.67 0.98725
Target:  5'- cGUGCUCAGACGcggucagcUCACUguGAGCaCUGCAu -3'
miRNA:   3'- uUACGGGUUUGU--------AGUGA--UUUG-GGCGU- -5'
13121 5' -49.3 NC_003401.1 + 117617 0.66 0.994611
Target:  5'- --gGCCCAAACAggcaGCc-AAUCCGCGa -3'
miRNA:   3'- uuaCGGGUUUGUag--UGauUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 122524 0.67 0.985494
Target:  5'- uGGUGgUC-AACGUCACUuguuAACCCGUAa -3'
miRNA:   3'- -UUACgGGuUUGUAGUGAu---UUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 122656 0.69 0.967971
Target:  5'- --cGCCCAAucACAucgcaucugugugaaUCACUGAcaccaagcccagccGCCCGCGa -3'
miRNA:   3'- uuaCGGGUU--UGU---------------AGUGAUU--------------UGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 124612 0.73 0.856197
Target:  5'- --aGCCCAAACGgaacCAa-AAACCCGCAg -3'
miRNA:   3'- uuaCGGGUUUGUa---GUgaUUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 128321 0.72 0.872461
Target:  5'- cGGUGUCCAGAuacgcCGUCAU--GGCCCGCAg -3'
miRNA:   3'- -UUACGGGUUU-----GUAGUGauUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 128955 0.66 0.995329
Target:  5'- --gGCCCAAcGCAcgaacccUCGCUGGGCCgcUGCAg -3'
miRNA:   3'- uuaCGGGUU-UGU-------AGUGAUUUGG--GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.