Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13121 | 5' | -49.3 | NC_003401.1 | + | 74713 | 0.79 | 0.502783 |
Target: 5'- --cGUCCAAACGg-ACUAAACCCGCAa -3' miRNA: 3'- uuaCGGGUUUGUagUGAUUUGGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 42741 | 0.66 | 0.995404 |
Target: 5'- --aGCCCGucgcuuACGUUGCgggGGugCCGCAc -3' miRNA: 3'- uuaCGGGUu-----UGUAGUGa--UUugGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 109214 | 0.66 | 0.99371 |
Target: 5'- --aGCCCGuACGUCACaAAACacaCGUAg -3' miRNA: 3'- uuaCGGGUuUGUAGUGaUUUGg--GCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 100601 | 0.66 | 0.992693 |
Target: 5'- cGUGCaCCAucgaaGACAUC-CcAAGCCCGCc -3' miRNA: 3'- uUACG-GGU-----UUGUAGuGaUUUGGGCGu -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 84008 | 0.67 | 0.990267 |
Target: 5'- uGUGCUCGGGCGUaCGCUGAuCUCGUc -3' miRNA: 3'- uUACGGGUUUGUA-GUGAUUuGGGCGu -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 104281 | 0.67 | 0.988838 |
Target: 5'- aGGUGCUgAAGCAggCGCUagacGAACUCGCGc -3' miRNA: 3'- -UUACGGgUUUGUa-GUGA----UUUGGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 106709 | 0.67 | 0.985494 |
Target: 5'- gAGUGCucaCCGAACc-CGCcAAACCCGCAa -3' miRNA: 3'- -UUACG---GGUUUGuaGUGaUUUGGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 122524 | 0.67 | 0.985494 |
Target: 5'- uGGUGgUC-AACGUCACUuguuAACCCGUAa -3' miRNA: 3'- -UUACgGGuUUGUAGUGAu---UUGGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 43126 | 0.68 | 0.975778 |
Target: 5'- --gGCCUGAACA-CACUAGucacggaauacgcgGCCCGCc -3' miRNA: 3'- uuaCGGGUUUGUaGUGAUU--------------UGGGCGu -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 89847 | 0.71 | 0.915062 |
Target: 5'- -uUGCCCGGGCAUCGucCUGuucaAACCCaGCGu -3' miRNA: 3'- uuACGGGUUUGUAGU--GAU----UUGGG-CGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 53808 | 0.7 | 0.947794 |
Target: 5'- cGUGCCUAAACAU-GC---ACCCGCAc -3' miRNA: 3'- uUACGGGUUUGUAgUGauuUGGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 107987 | 0.7 | 0.949624 |
Target: 5'- cGUGCUCAAgGCGUCcCUGAacgauuggcuccuuaACCCGCAa -3' miRNA: 3'- uUACGGGUU-UGUAGuGAUU---------------UGGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 85676 | 0.69 | 0.964183 |
Target: 5'- --cGCCCGAGCAUgGC-AAA-CCGCAu -3' miRNA: 3'- uuaCGGGUUUGUAgUGaUUUgGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 105942 | 0.69 | 0.965595 |
Target: 5'- cGUGCCCAuugaaacgcuacccGCAUCcCUccACCCGCAc -3' miRNA: 3'- uUACGGGUu-------------UGUAGuGAuuUGGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 90871 | 0.68 | 0.97383 |
Target: 5'- -uUGCau-GGCGUCGCUGcaGGCCCGCc -3' miRNA: 3'- uuACGgguUUGUAGUGAU--UUGGGCGu -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 128955 | 0.66 | 0.995329 |
Target: 5'- --gGCCCAAcGCAcgaacccUCGCUGGGCCgcUGCAg -3' miRNA: 3'- uuaCGGGUU-UGU-------AGUGAUUUGG--GCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 23740 | 0.74 | 0.811561 |
Target: 5'- --cGUCCAGgcGCGUCACUAccgaAACCCGUg -3' miRNA: 3'- uuaCGGGUU--UGUAGUGAU----UUGGGCGu -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 124612 | 0.73 | 0.856197 |
Target: 5'- --aGCCCAAACGgaacCAa-AAACCCGCAg -3' miRNA: 3'- uuaCGGGUUUGUa---GUgaUUUGGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 128321 | 0.72 | 0.872461 |
Target: 5'- cGGUGUCCAGAuacgcCGUCAU--GGCCCGCAg -3' miRNA: 3'- -UUACGGGUUU-----GUAGUGauUUGGGCGU- -5' |
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13121 | 5' | -49.3 | NC_003401.1 | + | 105813 | 0.72 | 0.897783 |
Target: 5'- gGGUGCUCGGugGUCGuuucucgccucggcgUUGGACCCGCGg -3' miRNA: 3'- -UUACGGGUUugUAGU---------------GAUUUGGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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