miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13121 5' -49.3 NC_003401.1 + 107987 0.7 0.949624
Target:  5'- cGUGCUCAAgGCGUCcCUGAacgauuggcuccuuaACCCGCAa -3'
miRNA:   3'- uUACGGGUU-UGUAGuGAUU---------------UGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 53808 0.7 0.947794
Target:  5'- cGUGCCUAAACAU-GC---ACCCGCAc -3'
miRNA:   3'- uUACGGGUUUGUAgUGauuUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 106302 0.7 0.94303
Target:  5'- --gGUCCGGGCAUCACguaaaacGGCCUGCu -3'
miRNA:   3'- uuaCGGGUUUGUAGUGau-----UUGGGCGu -5'
13121 5' -49.3 NC_003401.1 + 89847 0.71 0.915062
Target:  5'- -uUGCCCGGGCAUCGucCUGuucaAACCCaGCGu -3'
miRNA:   3'- uuACGGGUUUGUAGU--GAU----UUGGG-CGU- -5'
13121 5' -49.3 NC_003401.1 + 29002 0.71 0.908635
Target:  5'- --gGCCCuGGCGUCACg--GCUCGCGg -3'
miRNA:   3'- uuaCGGGuUUGUAGUGauuUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 45029 0.71 0.901249
Target:  5'- --aGCCCAuagugugcgcgcuGACcagaAUCGCUAGACCCGUu -3'
miRNA:   3'- uuaCGGGU-------------UUG----UAGUGAUUUGGGCGu -5'
13121 5' -49.3 NC_003401.1 + 105813 0.72 0.897783
Target:  5'- gGGUGCUCGGugGUCGuuucucgccucggcgUUGGACCCGCGg -3'
miRNA:   3'- -UUACGGGUUugUAGU---------------GAUUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 128321 0.72 0.872461
Target:  5'- cGGUGUCCAGAuacgcCGUCAU--GGCCCGCAg -3'
miRNA:   3'- -UUACGGGUUU-----GUAGUGauUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 124612 0.73 0.856197
Target:  5'- --aGCCCAAACGgaacCAa-AAACCCGCAg -3'
miRNA:   3'- uuaCGGGUUUGUa---GUgaUUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 23740 0.74 0.811561
Target:  5'- --cGUCCAGgcGCGUCACUAccgaAACCCGUg -3'
miRNA:   3'- uuaCGGGUU--UGUAGUGAU----UUGGGCGu -5'
13121 5' -49.3 NC_003401.1 + 74713 0.79 0.502783
Target:  5'- --cGUCCAAACGg-ACUAAACCCGCAa -3'
miRNA:   3'- uuaCGGGUUUGUagUGAUUUGGGCGU- -5'
13121 5' -49.3 NC_003401.1 + 31333 1.07 0.011362
Target:  5'- cAAUGCCCAAACAUCACUAAACCCGCAa -3'
miRNA:   3'- -UUACGGGUUUGUAGUGAUUUGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.