miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13122 3' -56.3 NC_003401.1 + 64486 0.66 0.862043
Target:  5'- cCCGUcaaggacCCCGCCGGCCACucccaGGaUGCu -3'
miRNA:   3'- uGGCAaa-----GGGUGGUCGGUG-----CCaACGu -5'
13122 3' -56.3 NC_003401.1 + 132340 0.66 0.862043
Target:  5'- uCCGc--CCCGCCGGCC-CGGgcccGCGg -3'
miRNA:   3'- uGGCaaaGGGUGGUCGGuGCCaa--CGU- -5'
13122 3' -56.3 NC_003401.1 + 106328 0.67 0.829628
Target:  5'- -gCGUUUUUgGCCAGUCugGGggGUAu -3'
miRNA:   3'- ugGCAAAGGgUGGUCGGugCCaaCGU- -5'
13122 3' -56.3 NC_003401.1 + 79204 0.67 0.812285
Target:  5'- uACUGUUaCgCAcCCGGCCACGGUUuCAu -3'
miRNA:   3'- -UGGCAAaGgGU-GGUCGGUGCCAAcGU- -5'
13122 3' -56.3 NC_003401.1 + 43261 0.67 0.812285
Target:  5'- -gCGUUUCCCacgcucgccGCCAGUCACaGGUcucUGCu -3'
miRNA:   3'- ugGCAAAGGG---------UGGUCGGUG-CCA---ACGu -5'
13122 3' -56.3 NC_003401.1 + 32980 0.67 0.794273
Target:  5'- uACCGUUUCgugcgacagCCGCCGGCauCGGUcGCAa -3'
miRNA:   3'- -UGGCAAAG---------GGUGGUCGguGCCAaCGU- -5'
13122 3' -56.3 NC_003401.1 + 120816 0.67 0.794273
Target:  5'- gUCG-UUCCCACCGGCgACGGg---- -3'
miRNA:   3'- uGGCaAAGGGUGGUCGgUGCCaacgu -5'
13122 3' -56.3 NC_003401.1 + 89114 0.68 0.766154
Target:  5'- uGCCGUc-CCUGCCAGCCcuACGGcgUGUg -3'
miRNA:   3'- -UGGCAaaGGGUGGUCGG--UGCCa-ACGu -5'
13122 3' -56.3 NC_003401.1 + 82998 0.7 0.655604
Target:  5'- aGCgGUUaauUCCCuGCCAGCCGCG--UGCAa -3'
miRNA:   3'- -UGgCAA---AGGG-UGGUCGGUGCcaACGU- -5'
13122 3' -56.3 NC_003401.1 + 9594 0.7 0.624537
Target:  5'- cAUUGUUgCCCGCCuGCCACGGUUu-- -3'
miRNA:   3'- -UGGCAAaGGGUGGuCGGUGCCAAcgu -5'
13122 3' -56.3 NC_003401.1 + 9062 0.72 0.543504
Target:  5'- cCCGUUUUCUuaaagggggagcuuuCCGGCCACaGGUUGCGg -3'
miRNA:   3'- uGGCAAAGGGu--------------GGUCGGUG-CCAACGU- -5'
13122 3' -56.3 NC_003401.1 + 27697 0.73 0.493004
Target:  5'- gACCGgcgugguggCUCGCCGGCUGCGGggGCGg -3'
miRNA:   3'- -UGGCaaa------GGGUGGUCGGUGCCaaCGU- -5'
13122 3' -56.3 NC_003401.1 + 51581 0.73 0.473786
Target:  5'- aACCGUc-CCCGCCguucgaGGCCucGCGGUUGCGc -3'
miRNA:   3'- -UGGCAaaGGGUGG------UCGG--UGCCAACGU- -5'
13122 3' -56.3 NC_003401.1 + 33178 1.08 0.002497
Target:  5'- uACCGUUUCCCACCAGCCACGGUUGCAg -3'
miRNA:   3'- -UGGCAAAGGGUGGUCGGUGCCAACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.