miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13122 5' -56.5 NC_003401.1 + 32339 0.66 0.875875
Target:  5'- uGGUGCCgGGCGGUgg-CGCGCGu---- -3'
miRNA:   3'- -CUACGG-CCGCCGacaGCGUGCuuugc -5'
13122 5' -56.5 NC_003401.1 + 66886 0.66 0.868528
Target:  5'- -cUGgCGuGCGGCUGUCaaagguGCGCGAG-CGc -3'
miRNA:   3'- cuACgGC-CGCCGACAG------CGUGCUUuGC- -5'
13122 5' -56.5 NC_003401.1 + 11847 0.66 0.867781
Target:  5'- --cGCCGGUGGCcGaggCGCugcacacGCGAAACu -3'
miRNA:   3'- cuaCGGCCGCCGaCa--GCG-------UGCUUUGc -5'
13122 5' -56.5 NC_003401.1 + 117941 0.66 0.853198
Target:  5'- uGGUGCgcaugagGGCGGCgggGUCGCgGCGAGgucACGc -3'
miRNA:   3'- -CUACGg------CCGCCGa--CAGCG-UGCUU---UGC- -5'
13122 5' -56.5 NC_003401.1 + 49882 0.66 0.853198
Target:  5'- --cGCCGcGCGcCUGgcccCGCACGAGAUa -3'
miRNA:   3'- cuaCGGC-CGCcGACa---GCGUGCUUUGc -5'
13122 5' -56.5 NC_003401.1 + 43421 0.66 0.853198
Target:  5'- uGUGaCUGGCGGCgagCGUggGAAACGc -3'
miRNA:   3'- cUAC-GGCCGCCGacaGCGugCUUUGC- -5'
13122 5' -56.5 NC_003401.1 + 119746 0.66 0.845226
Target:  5'- --cGgCGGCGGCcgcgagGUUGCGgcCGAAACGc -3'
miRNA:   3'- cuaCgGCCGCCGa-----CAGCGU--GCUUUGC- -5'
13122 5' -56.5 NC_003401.1 + 62649 0.67 0.837059
Target:  5'- --cGCCuccagaauaaaGGUGGCgUGUCGCugGuuuGGCGg -3'
miRNA:   3'- cuaCGG-----------CCGCCG-ACAGCGugCu--UUGC- -5'
13122 5' -56.5 NC_003401.1 + 132516 0.67 0.837059
Target:  5'- gGcgGCCGGgGGCggcgGcCGCgggcccgggccgGCGggGCGg -3'
miRNA:   3'- -CuaCGGCCgCCGa---CaGCG------------UGCuuUGC- -5'
13122 5' -56.5 NC_003401.1 + 12416 0.67 0.828705
Target:  5'- --aGUCGGCGGuCUG-CGCGCu-GACGc -3'
miRNA:   3'- cuaCGGCCGCC-GACaGCGUGcuUUGC- -5'
13122 5' -56.5 NC_003401.1 + 119098 0.67 0.821031
Target:  5'- gGGUGCguUGGCGGCcacgaccuuggccacGUCGCGCcugGAGACGg -3'
miRNA:   3'- -CUACG--GCCGCCGa--------------CAGCGUG---CUUUGC- -5'
13122 5' -56.5 NC_003401.1 + 773 0.67 0.802591
Target:  5'- -cUGCCGGCcaGCUG-CGUGCGAGgGCGu -3'
miRNA:   3'- cuACGGCCGc-CGACaGCGUGCUU-UGC- -5'
13122 5' -56.5 NC_003401.1 + 133488 0.67 0.802591
Target:  5'- -cUGCCGGCcaGCUG-CGUGCGAGgGCGu -3'
miRNA:   3'- cuACGGCCGc-CGACaGCGUGCUU-UGC- -5'
13122 5' -56.5 NC_003401.1 + 22755 0.67 0.793563
Target:  5'- --cGCUGGUGGCaa-CGCACG-AGCGa -3'
miRNA:   3'- cuaCGGCCGCCGacaGCGUGCuUUGC- -5'
13122 5' -56.5 NC_003401.1 + 35250 0.67 0.793563
Target:  5'- ---uUUGGCGGCUGUUGCACGcuuuucACGc -3'
miRNA:   3'- cuacGGCCGCCGACAGCGUGCuu----UGC- -5'
13122 5' -56.5 NC_003401.1 + 16666 0.7 0.666176
Target:  5'- -cUGCgGcGCGGCUGUUGUGC-AAGCGg -3'
miRNA:   3'- cuACGgC-CGCCGACAGCGUGcUUUGC- -5'
13122 5' -56.5 NC_003401.1 + 132573 0.7 0.645661
Target:  5'- cGAUGCCgGGCGGCcGcCGCcCGGcauGGCGg -3'
miRNA:   3'- -CUACGG-CCGCCGaCaGCGuGCU---UUGC- -5'
13122 5' -56.5 NC_003401.1 + 68706 0.71 0.573933
Target:  5'- cGAUGCCcugGGCGcauuCUG-CGCACGGGACGu -3'
miRNA:   3'- -CUACGG---CCGCc---GACaGCGUGCUUUGC- -5'
13122 5' -56.5 NC_003401.1 + 132454 0.72 0.563797
Target:  5'- --gGCCGGCGGCgcccggCGCGCGGGcccggggggcgcGCGg -3'
miRNA:   3'- cuaCGGCCGCCGaca---GCGUGCUU------------UGC- -5'
13122 5' -56.5 NC_003401.1 + 33142 1.1 0.002037
Target:  5'- cGAUGCCGGCGGCUGUCGCACGAAACGg -3'
miRNA:   3'- -CUACGGCCGCCGACAGCGUGCUUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.