miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13123 5' -55.6 NC_003401.1 + 18493 0.66 0.912781
Target:  5'- aGGUCUCGCggcgcgucgucggcgGAGcuuaaUCGCAcCACGGGGc -3'
miRNA:   3'- -CCAGGGCGa--------------CUC-----AGUGUuGUGCCCUc -5'
13123 5' -55.6 NC_003401.1 + 85249 0.66 0.912187
Target:  5'- aGGUCCCcCUccccgCGCGACACGGGu- -3'
miRNA:   3'- -CCAGGGcGAcuca-GUGUUGUGCCCuc -5'
13123 5' -55.6 NC_003401.1 + 8779 0.66 0.904242
Target:  5'- cGUCCCGUgauaaccguucccaUGguAGUCaACAaauACACGGGGGu -3'
miRNA:   3'- cCAGGGCG--------------AC--UCAG-UGU---UGUGCCCUC- -5'
13123 5' -55.6 NC_003401.1 + 49835 0.66 0.8959
Target:  5'- aGGUCCCuuGC-GAGUCagguggcguguauccGCGAUACGGGu- -3'
miRNA:   3'- -CCAGGG--CGaCUCAG---------------UGUUGUGCCCuc -5'
13123 5' -55.6 NC_003401.1 + 20882 0.66 0.893255
Target:  5'- gGGUCCUccgcaGCUGAa--GCAGCAgGGGAu -3'
miRNA:   3'- -CCAGGG-----CGACUcagUGUUGUgCCCUc -5'
13123 5' -55.6 NC_003401.1 + 41975 0.66 0.893255
Target:  5'- cGGgacCCCGCgcaacuguUGAccacUCACGACgACGGGAGa -3'
miRNA:   3'- -CCa--GGGCG--------ACUc---AGUGUUG-UGCCCUC- -5'
13123 5' -55.6 NC_003401.1 + 114189 0.67 0.889218
Target:  5'- cGGgaacgCgCGCUGAccgcccuccccaaaUCACAACACGGGAc -3'
miRNA:   3'- -CCa----GgGCGACUc-------------AGUGUUGUGCCCUc -5'
13123 5' -55.6 NC_003401.1 + 118343 0.67 0.886481
Target:  5'- cGGUgCCGCcgccgGGGUCGCc-CGCGGGu- -3'
miRNA:   3'- -CCAgGGCGa----CUCAGUGuuGUGCCCuc -5'
13123 5' -55.6 NC_003401.1 + 7671 0.67 0.872259
Target:  5'- aGGUCCCgGCUGuuccGGUCACcACGuaGGGGu -3'
miRNA:   3'- -CCAGGG-CGAC----UCAGUGuUGUgcCCUC- -5'
13123 5' -55.6 NC_003401.1 + 117921 0.67 0.857173
Target:  5'- gGGUCgCgGCgaGGUCACGccgaaccggGCGCGGGGGu -3'
miRNA:   3'- -CCAG-GgCGacUCAGUGU---------UGUGCCCUC- -5'
13123 5' -55.6 NC_003401.1 + 108586 0.68 0.807234
Target:  5'- cGGUcgacucCCCuaUGGGcaaCACAACACGGGAc -3'
miRNA:   3'- -CCA------GGGcgACUCa--GUGUUGUGCCCUc -5'
13123 5' -55.6 NC_003401.1 + 103601 0.7 0.74188
Target:  5'- aGUCaaaCGCUGggGGUCugAACGCGGGc- -3'
miRNA:   3'- cCAGg--GCGAC--UCAGugUUGUGCCCuc -5'
13123 5' -55.6 NC_003401.1 + 124249 0.7 0.732084
Target:  5'- -uUCCCGCcgcccgUGGGUCA-AGCACGGGGc -3'
miRNA:   3'- ccAGGGCG------ACUCAGUgUUGUGCCCUc -5'
13123 5' -55.6 NC_003401.1 + 126346 0.7 0.732084
Target:  5'- aGGUCgauCC-CUGGGUCagguGCGGCACGGGGa -3'
miRNA:   3'- -CCAG---GGcGACUCAG----UGUUGUGCCCUc -5'
13123 5' -55.6 NC_003401.1 + 30819 0.71 0.661596
Target:  5'- aGUaCCCGUUGAGgaggCACAGCGCGGc-- -3'
miRNA:   3'- cCA-GGGCGACUCa---GUGUUGUGCCcuc -5'
13123 5' -55.6 NC_003401.1 + 58435 0.72 0.620593
Target:  5'- uGGUCCaCGCUuuGUCACGACAaacUGuGGAGg -3'
miRNA:   3'- -CCAGG-GCGAcuCAGUGUUGU---GC-CCUC- -5'
13123 5' -55.6 NC_003401.1 + 121450 0.72 0.610345
Target:  5'- uGGUCCCGgUGAGUCGg---GCGGGGa -3'
miRNA:   3'- -CCAGGGCgACUCAGUguugUGCCCUc -5'
13123 5' -55.6 NC_003401.1 + 6713 0.74 0.519675
Target:  5'- --aCCUGCUGGGUCugGAacacCGCGGGAa -3'
miRNA:   3'- ccaGGGCGACUCAGugUU----GUGCCCUc -5'
13123 5' -55.6 NC_003401.1 + 42115 1.11 0.002096
Target:  5'- gGGUCCCGCUGAGUCACAACACGGGAGg -3'
miRNA:   3'- -CCAGGGCGACUCAGUGUUGUGCCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.