miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13124 3' -54.4 NC_003401.1 + 50985 0.66 0.939713
Target:  5'- gGuGGUUGCGAaaaCugGuuUCGGCAACc- -3'
miRNA:   3'- gC-CCAGCGCU---GugCuuAGCCGUUGuu -5'
13124 3' -54.4 NC_003401.1 + 80850 0.66 0.939713
Target:  5'- uGGG-CGCaucGACGgGAuUCGGCGACu- -3'
miRNA:   3'- gCCCaGCG---CUGUgCUuAGCCGUUGuu -5'
13124 3' -54.4 NC_003401.1 + 132532 0.66 0.934786
Target:  5'- cCGGcG-CGCGGCGCGGggCGGCcgggGGCGg -3'
miRNA:   3'- -GCC-CaGCGCUGUGCUuaGCCG----UUGUu -5'
13124 3' -54.4 NC_003401.1 + 119728 0.66 0.934786
Target:  5'- -aGGUgGUGGCAacCGAcUCGGCGGCGg -3'
miRNA:   3'- gcCCAgCGCUGU--GCUuAGCCGUUGUu -5'
13124 3' -54.4 NC_003401.1 + 72527 0.66 0.924188
Target:  5'- aCGGGUUGCcacguuacauaaGGC-CGAAaCGGCAGCu- -3'
miRNA:   3'- -GCCCAGCG------------CUGuGCUUaGCCGUUGuu -5'
13124 3' -54.4 NC_003401.1 + 21506 0.66 0.918517
Target:  5'- uGGGaCGCG-CACGggUCccgcgccuuuuuGGCGGCGc -3'
miRNA:   3'- gCCCaGCGCuGUGCuuAG------------CCGUUGUu -5'
13124 3' -54.4 NC_003401.1 + 33152 0.67 0.912598
Target:  5'- -aGGUUGCGAC-CGAugcCGGCGGCu- -3'
miRNA:   3'- gcCCAGCGCUGuGCUua-GCCGUUGuu -5'
13124 3' -54.4 NC_003401.1 + 125123 0.67 0.906432
Target:  5'- aCGGGUUGCGuggguagugcuGCGCGAacauccucggGUCGGCGu--- -3'
miRNA:   3'- -GCCCAGCGC-----------UGUGCU----------UAGCCGUuguu -5'
13124 3' -54.4 NC_003401.1 + 9512 0.67 0.906432
Target:  5'- aGGG-CGcCGGCGCuagGggUCGGUAGCu- -3'
miRNA:   3'- gCCCaGC-GCUGUG---CuuAGCCGUUGuu -5'
13124 3' -54.4 NC_003401.1 + 84355 0.67 0.893371
Target:  5'- gGGGUCGUGcggacGCACGG--UGGCGGCu- -3'
miRNA:   3'- gCCCAGCGC-----UGUGCUuaGCCGUUGuu -5'
13124 3' -54.4 NC_003401.1 + 18496 0.68 0.84043
Target:  5'- aCGaGGucUCGCGGCGCGucGUCGGCGGa-- -3'
miRNA:   3'- -GC-CC--AGCGCUGUGCu-UAGCCGUUguu -5'
13124 3' -54.4 NC_003401.1 + 122728 0.69 0.805711
Target:  5'- aGGGcCGCGGCucacCGGcgCGGCGgACAAg -3'
miRNA:   3'- gCCCaGCGCUGu---GCUuaGCCGU-UGUU- -5'
13124 3' -54.4 NC_003401.1 + 68922 0.71 0.718957
Target:  5'- aGGGUauuauaaGUGACGaggacCGAGUCGGCAAUAGc -3'
miRNA:   3'- gCCCAg------CGCUGU-----GCUUAGCCGUUGUU- -5'
13124 3' -54.4 NC_003401.1 + 11543 0.73 0.615481
Target:  5'- uGGGUCGUGAuaauCGCGA-UCGGCAcgGCGGu -3'
miRNA:   3'- gCCCAGCGCU----GUGCUuAGCCGU--UGUU- -5'
13124 3' -54.4 NC_003401.1 + 108667 0.74 0.563679
Target:  5'- aCGGGUUGCcGCACGGgacgGUCGGCGcCAGu -3'
miRNA:   3'- -GCCCAGCGcUGUGCU----UAGCCGUuGUU- -5'
13124 3' -54.4 NC_003401.1 + 117922 0.74 0.540214
Target:  5'- gGGGUCGCGGCGaggucacgcCGAAccgggcgcggggguUCGGCGGCGGu -3'
miRNA:   3'- gCCCAGCGCUGU---------GCUU--------------AGCCGUUGUU- -5'
13124 3' -54.4 NC_003401.1 + 19382 0.75 0.503204
Target:  5'- aGGGUCGcCGuCACGGggccGUCGGUGACGAu -3'
miRNA:   3'- gCCCAGC-GCuGUGCU----UAGCCGUUGUU- -5'
13124 3' -54.4 NC_003401.1 + 48292 0.76 0.418386
Target:  5'- aGGGUUGCacgcgGACACGggUCGcGUAGCAGu -3'
miRNA:   3'- gCCCAGCG-----CUGUGCuuAGC-CGUUGUU- -5'
13124 3' -54.4 NC_003401.1 + 45712 1.06 0.005614
Target:  5'- gCGGGUCGCGACACGAAUCGGCAACAAc -3'
miRNA:   3'- -GCCCAGCGCUGUGCUUAGCCGUUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.