miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13124 5' -52.4 NC_003401.1 + 75651 0.66 0.973158
Target:  5'- cGCAACGguuaACCCUCCGCAgc-UGUGu -3'
miRNA:   3'- aUGUUGUg---UGGGAGGCGUaguGCAUg -5'
13124 5' -52.4 NC_003401.1 + 79929 0.66 0.970228
Target:  5'- gGgAACACGCCCUgCCGCuAUCugcauCGaGCg -3'
miRNA:   3'- aUgUUGUGUGGGA-GGCG-UAGu----GCaUG- -5'
13124 5' -52.4 NC_003401.1 + 98711 0.66 0.970228
Target:  5'- aGCGGgGCGCUCUCUGCGagCGCGa-- -3'
miRNA:   3'- aUGUUgUGUGGGAGGCGUa-GUGCaug -5'
13124 5' -52.4 NC_003401.1 + 20282 0.66 0.970228
Target:  5'- gACGACGCGCCCggggaCGCGgacgcCGCGgcCa -3'
miRNA:   3'- aUGUUGUGUGGGag---GCGUa----GUGCauG- -5'
13124 5' -52.4 NC_003401.1 + 20149 0.66 0.967076
Target:  5'- -cCAGCAgCAUCCUCaguCGCGUCAgGUAa -3'
miRNA:   3'- auGUUGU-GUGGGAG---GCGUAGUgCAUg -5'
13124 5' -52.4 NC_003401.1 + 30836 0.66 0.960078
Target:  5'- cACAGCGCGgCCUgCGUGUC-CGaUACg -3'
miRNA:   3'- aUGUUGUGUgGGAgGCGUAGuGC-AUG- -5'
13124 5' -52.4 NC_003401.1 + 50034 0.67 0.952118
Target:  5'- -uCGGC-CGCCgUCCGgGgcUCGCGUACa -3'
miRNA:   3'- auGUUGuGUGGgAGGCgU--AGUGCAUG- -5'
13124 5' -52.4 NC_003401.1 + 97490 0.67 0.947764
Target:  5'- uUACAgaAUACAUCCaUCaCGUAacuUCACGUACg -3'
miRNA:   3'- -AUGU--UGUGUGGG-AG-GCGU---AGUGCAUG- -5'
13124 5' -52.4 NC_003401.1 + 27740 0.67 0.947764
Target:  5'- uUGCuGgAUGCCCUgCGCGcUCugGUACg -3'
miRNA:   3'- -AUGuUgUGUGGGAgGCGU-AGugCAUG- -5'
13124 5' -52.4 NC_003401.1 + 14636 0.67 0.947764
Target:  5'- aAgAACACAgCCggCCGUGcCGCGUGCg -3'
miRNA:   3'- aUgUUGUGUgGGa-GGCGUaGUGCAUG- -5'
13124 5' -52.4 NC_003401.1 + 14971 0.67 0.943156
Target:  5'- aGCGACugGCCCccguaCCGCAUCGUGg-- -3'
miRNA:   3'- aUGUUGugUGGGa----GGCGUAGUGCaug -5'
13124 5' -52.4 NC_003401.1 + 99301 0.67 0.936274
Target:  5'- cGCAGCGCACa-UCCGUcugaugcaacaccUCACGUACa -3'
miRNA:   3'- aUGUUGUGUGggAGGCGu------------AGUGCAUG- -5'
13124 5' -52.4 NC_003401.1 + 81093 0.67 0.933168
Target:  5'- -uCAACACACCCUucUCGCAcuUUuuGUGCa -3'
miRNA:   3'- auGUUGUGUGGGA--GGCGU--AGugCAUG- -5'
13124 5' -52.4 NC_003401.1 + 64108 0.68 0.927784
Target:  5'- --gAGCGCGCCCgcgccacugaCCGCGUUugGUGg -3'
miRNA:   3'- augUUGUGUGGGa---------GGCGUAGugCAUg -5'
13124 5' -52.4 NC_003401.1 + 16367 0.68 0.916235
Target:  5'- --uGACACcgacuCCCUCUuUAUCGCGUGCg -3'
miRNA:   3'- augUUGUGu----GGGAGGcGUAGUGCAUG- -5'
13124 5' -52.4 NC_003401.1 + 110113 0.68 0.91007
Target:  5'- gUGCGugGCuCCCguaaaaaCCGCGUC-CGUGCu -3'
miRNA:   3'- -AUGUugUGuGGGa------GGCGUAGuGCAUG- -5'
13124 5' -52.4 NC_003401.1 + 55889 0.69 0.867793
Target:  5'- uUGCuAgACACCCUuuGCGUUACGg-- -3'
miRNA:   3'- -AUGuUgUGUGGGAggCGUAGUGCaug -5'
13124 5' -52.4 NC_003401.1 + 94086 0.7 0.859906
Target:  5'- aACGGCGCACCgUUCGCAggUCACcagGCu -3'
miRNA:   3'- aUGUUGUGUGGgAGGCGU--AGUGca-UG- -5'
13124 5' -52.4 NC_003401.1 + 108915 0.71 0.808146
Target:  5'- gACAACACGCCCUCUGaa--ACG-ACa -3'
miRNA:   3'- aUGUUGUGUGGGAGGCguagUGCaUG- -5'
13124 5' -52.4 NC_003401.1 + 104807 0.72 0.75015
Target:  5'- -cCGGCGCAcggaggagcCCCUCUGCAccgccagaUCACGUACu -3'
miRNA:   3'- auGUUGUGU---------GGGAGGCGU--------AGUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.