Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13126 | 3' | -53.1 | NC_003401.1 | + | 121920 | 0.66 | 0.964637 |
Target: 5'- uGUUGGAgCGGggggcGCGGguGCGGCg -3' miRNA: 3'- cUAGCCUgGUUagau-CGCCguUGCCG- -5' |
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13126 | 3' | -53.1 | NC_003401.1 | + | 28180 | 0.66 | 0.964637 |
Target: 5'- cGAUgGGA-CGGUC-AGCucaGGCGGCGGUa -3' miRNA: 3'- -CUAgCCUgGUUAGaUCG---CCGUUGCCG- -5' |
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13126 | 3' | -53.1 | NC_003401.1 | + | 18147 | 0.66 | 0.964637 |
Target: 5'- -cUCGGGgCGAUCUGGCguuucuGGUcACGGg -3' miRNA: 3'- cuAGCCUgGUUAGAUCG------CCGuUGCCg -5' |
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13126 | 3' | -53.1 | NC_003401.1 | + | 30771 | 0.66 | 0.964637 |
Target: 5'- ---aGaGGCCGuuucgagUUGGCGGCAACGGg -3' miRNA: 3'- cuagC-CUGGUua-----GAUCGCCGUUGCCg -5' |
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13126 | 3' | -53.1 | NC_003401.1 | + | 69931 | 0.66 | 0.967906 |
Target: 5'- aGGUUaGuCCGccAUCUAGCGGCcACGGa -3' miRNA: 3'- -CUAGcCuGGU--UAGAUCGCCGuUGCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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