miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13127 3' -63.2 NC_003401.1 + 19570 0.67 0.489344
Target:  5'- uGGGGCAagccaucuucguguUCgCGCCGCG-GUUcggUGGCCCg -3'
miRNA:   3'- gUCCUGU--------------AG-GCGGCGCgCGG---ACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 14862 0.68 0.46489
Target:  5'- uCGGGugGUacucgUGCgCGCGCGCCacGCCCc -3'
miRNA:   3'- -GUCCugUAg----GCG-GCGCGCGGacCGGG- -5'
13127 3' -63.2 NC_003401.1 + 21778 0.68 0.46489
Target:  5'- -cGGcCGUCCGCUGCGCguGCCgcGGCgaCCa -3'
miRNA:   3'- guCCuGUAGGCGGCGCG--CGGa-CCG--GG- -5'
13127 3' -63.2 NC_003401.1 + 125138 0.68 0.46489
Target:  5'- -cGGACAugacaguuUCC-CCGUGgGCgCUGGCCUu -3'
miRNA:   3'- guCCUGU--------AGGcGGCGCgCG-GACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 127875 0.68 0.421367
Target:  5'- gAGGACAggcgugCCGgUGCGCGCCagcugcUGGCa- -3'
miRNA:   3'- gUCCUGUa-----GGCgGCGCGCGG------ACCGgg -5'
13127 3' -63.2 NC_003401.1 + 91220 0.69 0.404657
Target:  5'- -cGGuACAUCCaccuGCCGCGagaGCCaGGCCg -3'
miRNA:   3'- guCC-UGUAGG----CGGCGCg--CGGaCCGGg -5'
13127 3' -63.2 NC_003401.1 + 126855 0.69 0.396461
Target:  5'- cCAGG-CGuUCCGUCGCGUccuGCCUGGUg- -3'
miRNA:   3'- -GUCCuGU-AGGCGGCGCG---CGGACCGgg -5'
13127 3' -63.2 NC_003401.1 + 13489 0.69 0.380392
Target:  5'- -uGGACAaCaCGaucgaccugaaCCGCGacCGCCUGGCCCg -3'
miRNA:   3'- guCCUGUaG-GC-----------GGCGC--GCGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 45900 0.69 0.364765
Target:  5'- uCGGaGACGUgcuugUCGCCGC-CGUCaUGGCCCa -3'
miRNA:   3'- -GUC-CUGUA-----GGCGGCGcGCGG-ACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 72458 0.69 0.363995
Target:  5'- gAGGGCGucuuccaUCUGcCCGCGCGUCacGGCCUu -3'
miRNA:   3'- gUCCUGU-------AGGC-GGCGCGCGGa-CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 20270 0.7 0.35712
Target:  5'- gGGGACGcggaCGCCGCG-GCCauUGGCuCCg -3'
miRNA:   3'- gUCCUGUag--GCGGCGCgCGG--ACCG-GG- -5'
13127 3' -63.2 NC_003401.1 + 107630 0.7 0.349587
Target:  5'- cCGGGuCcgCCGCCaccGgGCGCggGGCCCa -3'
miRNA:   3'- -GUCCuGuaGGCGG---CgCGCGgaCCGGG- -5'
13127 3' -63.2 NC_003401.1 + 15211 0.7 0.34884
Target:  5'- gCAGGAgAUCuggaucaccgcguCGCCGuCGCGCgUGGCgCa -3'
miRNA:   3'- -GUCCUgUAG-------------GCGGC-GCGCGgACCGgG- -5'
13127 3' -63.2 NC_003401.1 + 53017 0.7 0.327675
Target:  5'- -cGGugucugCUGUCGUGCGCCgggGGCCCg -3'
miRNA:   3'- guCCugua--GGCGGCGCGCGGa--CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 69290 0.7 0.320601
Target:  5'- --cGACAUCUGCgGC-C-CCUGGCCCg -3'
miRNA:   3'- gucCUGUAGGCGgCGcGcGGACCGGG- -5'
13127 3' -63.2 NC_003401.1 + 132641 0.71 0.309521
Target:  5'- aAGGugGUCU-CCGCGcCGCCgggaggggggccggGGCCCg -3'
miRNA:   3'- gUCCugUAGGcGGCGC-GCGGa-------------CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 18297 0.71 0.300067
Target:  5'- --uGGCcgCCGCCGCGC-CCUGcCCCg -3'
miRNA:   3'- gucCUGuaGGCGGCGCGcGGACcGGG- -5'
13127 3' -63.2 NC_003401.1 + 132376 0.71 0.274291
Target:  5'- --cGGCcgCCccgcGCCGCGCGCCgGGCCg -3'
miRNA:   3'- gucCUGuaGG----CGGCGCGCGGaCCGGg -5'
13127 3' -63.2 NC_003401.1 + 122557 0.71 0.274291
Target:  5'- -uGGAaauucuuGUCCGCCGCGCcggugaGCCgcGGCCCu -3'
miRNA:   3'- guCCUg------UAGGCGGCGCG------CGGa-CCGGG- -5'
13127 3' -63.2 NC_003401.1 + 47849 0.72 0.268131
Target:  5'- gGGGACgGUCCGUC-CGgGCCgUGGUCCg -3'
miRNA:   3'- gUCCUG-UAGGCGGcGCgCGG-ACCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.