Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13127 | 5' | -59.9 | NC_003401.1 | + | 12708 | 0.69 | 0.48274 |
|
Target: 5'- uUGAGGCAGGGGUACGuGcccGUGAaGUUa -3' miRNA: 3'- -AUUCCGUCCCCGUGCuCc--CACUcCAG- -5' |
|||||||
| 13127 | 5' | -59.9 | NC_003401.1 | + | 132415 | 0.7 | 0.445621 |
|
Target: 5'- cGGGGcCGGGGGUcccGCGGGGGgccGGGGcCg -3' miRNA: 3'- aUUCC-GUCCCCG---UGCUCCCa--CUCCaG- -5' |
|||||||
| 13127 | 5' | -59.9 | NC_003401.1 | + | 121156 | 0.71 | 0.384729 |
|
Target: 5'- -cGGGCgcgGGGGGCGCGGGGGgcgcgccGGUUg -3' miRNA: 3'- auUCCG---UCCCCGUGCUCCCacu----CCAG- -5' |
|||||||
| 13127 | 5' | -59.9 | NC_003401.1 | + | 15372 | 0.73 | 0.307831 |
|
Target: 5'- --uGGCGGGGG-AgGGGGGUucauGAGGUCg -3' miRNA: 3'- auuCCGUCCCCgUgCUCCCA----CUCCAG- -5' |
|||||||
| 13127 | 5' | -59.9 | NC_003401.1 | + | 121650 | 0.75 | 0.205049 |
|
Target: 5'- gGGGGCcGGGGUgugACGGGGGUGAuGGUg -3' miRNA: 3'- aUUCCGuCCCCG---UGCUCCCACU-CCAg -5' |
|||||||
| 13127 | 5' | -59.9 | NC_003401.1 | + | 126964 | 0.78 | 0.136839 |
|
Target: 5'- cAGGGCAGGGGCAgGAaccGGUG-GGUCg -3' miRNA: 3'- aUUCCGUCCCCGUgCUc--CCACuCCAG- -5' |
|||||||
| 13127 | 5' | -59.9 | NC_003401.1 | + | 49857 | 1.07 | 0.00131 |
|
Target: 5'- aUAAGGCAGGGGCACGAGGGUGAGGUCc -3' miRNA: 3'- -AUUCCGUCCCCGUGCUCCCACUCCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home