miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13128 5' -56.8 NC_003401.1 + 121930 0.71 0.568128
Target:  5'- gGGGGCGcggguGCGgcGGCUG-GCGCGGCc -3'
miRNA:   3'- gCUCUGCu----CGCuaCCGACgCGCGUUG- -5'
13128 5' -56.8 NC_003401.1 + 27693 0.66 0.864726
Target:  5'- gCGAGACcGGCGugGUGGCU-CGC-CGGCu -3'
miRNA:   3'- -GCUCUGcUCGC--UACCGAcGCGcGUUG- -5'
13128 5' -56.8 NC_003401.1 + 119801 0.66 0.864726
Target:  5'- gGAGGCGgcgcAGCGGcaccgaGGCUaaacaGCGCGCAGg -3'
miRNA:   3'- gCUCUGC----UCGCUa-----CCGA-----CGCGCGUUg -5'
13128 5' -56.8 NC_003401.1 + 117870 0.66 0.849152
Target:  5'- aGAG-CGGcCGAUGGgUaCGCGCGGCg -3'
miRNA:   3'- gCUCuGCUcGCUACCgAcGCGCGUUG- -5'
13128 5' -56.8 NC_003401.1 + 20457 0.66 0.841063
Target:  5'- gGAGGCGccAGCGuagGGCUGgcCGCcCAACa -3'
miRNA:   3'- gCUCUGC--UCGCua-CCGAC--GCGcGUUG- -5'
13128 5' -56.8 NC_003401.1 + 20319 0.66 0.841063
Target:  5'- aGAGugGAGUGGUGGCacagGUaaacgaaccaGCGCu-- -3'
miRNA:   3'- gCUCugCUCGCUACCGa---CG----------CGCGuug -5'
13128 5' -56.8 NC_003401.1 + 30213 0.67 0.815671
Target:  5'- aCGAcGugGGgGCGucUGGC-GCGCGCGAa -3'
miRNA:   3'- -GCU-CugCU-CGCu-ACCGaCGCGCGUUg -5'
13128 5' -56.8 NC_003401.1 + 121150 0.67 0.815671
Target:  5'- uCGcGGCGGGCGcgGGggGCGCGgGGg -3'
miRNA:   3'- -GCuCUGCUCGCuaCCgaCGCGCgUUg -5'
13128 5' -56.8 NC_003401.1 + 27527 0.67 0.815671
Target:  5'- uGAcACGGGgGccGGCUGUGCGCuGGCc -3'
miRNA:   3'- gCUcUGCUCgCuaCCGACGCGCG-UUG- -5'
13128 5' -56.8 NC_003401.1 + 96390 0.67 0.797885
Target:  5'- aCGAGugG-GCGGgcaaaGGCUcGuCGCGCAGg -3'
miRNA:   3'- -GCUCugCuCGCUa----CCGA-C-GCGCGUUg -5'
13128 5' -56.8 NC_003401.1 + 132678 0.69 0.670769
Target:  5'- cCGGGGCGccucGGCGG-GGCccgGCGCGgGGCg -3'
miRNA:   3'- -GCUCUGC----UCGCUaCCGa--CGCGCgUUG- -5'
13128 5' -56.8 NC_003401.1 + 27856 0.69 0.701317
Target:  5'- aCGAGAacugaaCGGGCGGUGGUUGCGguCGUuggucGGCg -3'
miRNA:   3'- -GCUCU------GCUCGCUACCGACGC--GCG-----UUG- -5'
13128 5' -56.8 NC_003401.1 + 123722 0.68 0.721402
Target:  5'- aGAGuCGGGCGAU-GUUGC-CGUAGCg -3'
miRNA:   3'- gCUCuGCUCGCUAcCGACGcGCGUUG- -5'
13128 5' -56.8 NC_003401.1 + 123414 0.68 0.731333
Target:  5'- aGGGACGAGCcacuacguGGUGGgUGUGgugGCAGCg -3'
miRNA:   3'- gCUCUGCUCG--------CUACCgACGCg--CGUUG- -5'
13128 5' -56.8 NC_003401.1 + 32340 0.68 0.741176
Target:  5'- gGuGcCGGGCGGUGGC-GCGCGUc-- -3'
miRNA:   3'- gCuCuGCUCGCUACCGaCGCGCGuug -5'
13128 5' -56.8 NC_003401.1 + 119208 0.68 0.745088
Target:  5'- gCGAGAgccaccgaaaaaaggUGGGUGAcUGGUUGCGCcuGCGACc -3'
miRNA:   3'- -GCUCU---------------GCUCGCU-ACCGACGCG--CGUUG- -5'
13128 5' -56.8 NC_003401.1 + 51596 0.67 0.770091
Target:  5'- uCGAGGCcucGC---GGUUGCGCGCAGCc -3'
miRNA:   3'- -GCUCUGcu-CGcuaCCGACGCGCGUUG- -5'
13128 5' -56.8 NC_003401.1 + 41013 0.66 0.864726
Target:  5'- aCGAaGCGucucguGCGA-GGUUGgGUGCAGCa -3'
miRNA:   3'- -GCUcUGCu-----CGCUaCCGACgCGCGUUG- -5'
13128 5' -56.8 NC_003401.1 + 13878 0.73 0.469821
Target:  5'- gGGGGCcuGGGCGAUGGCguugGUGCGCc-- -3'
miRNA:   3'- gCUCUG--CUCGCUACCGa---CGCGCGuug -5'
13128 5' -56.8 NC_003401.1 + 118114 0.72 0.537896
Target:  5'- gGGGACG-GUGggGGCcGCGCGCcACc -3'
miRNA:   3'- gCUCUGCuCGCuaCCGaCGCGCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.