miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13129 3' -53.2 NC_003401.1 + 133535 0.66 0.950553
Target:  5'- cGGGACccGGGCCUCucccCCGC-CCGg- -3'
miRNA:   3'- uCUCUGuaCCUGGAGu---GGUGuGGUau -5'
13129 3' -53.2 NC_003401.1 + 15135 0.66 0.950553
Target:  5'- cGGGACGUGcGACCcCAUCccggACACCGa- -3'
miRNA:   3'- uCUCUGUAC-CUGGaGUGG----UGUGGUau -5'
13129 3' -53.2 NC_003401.1 + 12008 0.66 0.94612
Target:  5'- -cGGACAgGGACUUCacuaACCAgACCGUGu -3'
miRNA:   3'- ucUCUGUaCCUGGAG----UGGUgUGGUAU- -5'
13129 3' -53.2 NC_003401.1 + 48755 0.66 0.94612
Target:  5'- gGGAG-CAUGGGCCUCAUaagcugggUACgGCUAUAa -3'
miRNA:   3'- -UCUCuGUACCUGGAGUG--------GUG-UGGUAU- -5'
13129 3' -53.2 NC_003401.1 + 115091 0.66 0.934958
Target:  5'- gGGGGACuugcaccccaccgggGGACCUgCACCcCACCGg- -3'
miRNA:   3'- -UCUCUGua-------------CCUGGA-GUGGuGUGGUau -5'
13129 3' -53.2 NC_003401.1 + 31162 0.67 0.930756
Target:  5'- cGGGcCGUGGuacaguaGCCUCACagauaACGCCAUGc -3'
miRNA:   3'- uCUCuGUACC-------UGGAGUGg----UGUGGUAU- -5'
13129 3' -53.2 NC_003401.1 + 91570 0.67 0.925831
Target:  5'- cGGAGGCGUc--CCUCGCCugGCUAUc -3'
miRNA:   3'- -UCUCUGUAccuGGAGUGGugUGGUAu -5'
13129 3' -53.2 NC_003401.1 + 41533 0.67 0.914134
Target:  5'- -cGGACGcGGGCCUgCGCCcCACCAc- -3'
miRNA:   3'- ucUCUGUaCCUGGA-GUGGuGUGGUau -5'
13129 3' -53.2 NC_003401.1 + 64130 0.67 0.907899
Target:  5'- --cGACA-GGugC-CACCACACCAc- -3'
miRNA:   3'- ucuCUGUaCCugGaGUGGUGUGGUau -5'
13129 3' -53.2 NC_003401.1 + 18283 0.68 0.887675
Target:  5'- aAGAGACAcccuUGuGGCCgcCGCCGCGCCc-- -3'
miRNA:   3'- -UCUCUGU----AC-CUGGa-GUGGUGUGGuau -5'
13129 3' -53.2 NC_003401.1 + 118115 0.68 0.887675
Target:  5'- uGGGGACGguggGGGCCgCGCgC-CACCAUGg -3'
miRNA:   3'- -UCUCUGUa---CCUGGaGUG-GuGUGGUAU- -5'
13129 3' -53.2 NC_003401.1 + 122106 0.68 0.880439
Target:  5'- aGGGGGCGUGGcacgGCCgcgccagcCGCCGCACCc-- -3'
miRNA:   3'- -UCUCUGUACC----UGGa-------GUGGUGUGGuau -5'
13129 3' -53.2 NC_003401.1 + 106916 0.69 0.857318
Target:  5'- cGAGA-GUcGGCCUCGCCGCACCc-- -3'
miRNA:   3'- uCUCUgUAcCUGGAGUGGUGUGGuau -5'
13129 3' -53.2 NC_003401.1 + 46330 0.7 0.814477
Target:  5'- uGGAGACAcGG-CUUCAUCGCGCCc-- -3'
miRNA:   3'- -UCUCUGUaCCuGGAGUGGUGUGGuau -5'
13129 3' -53.2 NC_003401.1 + 89644 0.7 0.805335
Target:  5'- --uGGCAUauacGGACCgCGCCGCACCGUc -3'
miRNA:   3'- ucuCUGUA----CCUGGaGUGGUGUGGUAu -5'
13129 3' -53.2 NC_003401.1 + 85102 0.71 0.767164
Target:  5'- cGGGGAgGgGGACCUgGCCAUAUCAa- -3'
miRNA:   3'- -UCUCUgUaCCUGGAgUGGUGUGGUau -5'
13129 3' -53.2 NC_003401.1 + 52640 1.07 0.005423
Target:  5'- gAGAGACAUGGACCUCACCACACCAUAc -3'
miRNA:   3'- -UCUCUGUACCUGGAGUGGUGUGGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.