Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 52640 | 1.07 | 0.005423 |
Target: 5'- gAGAGACAUGGACCUCACCACACCAUAc -3' miRNA: 3'- -UCUCUGUACCUGGAGUGGUGUGGUAU- -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 85102 | 0.71 | 0.767164 |
Target: 5'- cGGGGAgGgGGACCUgGCCAUAUCAa- -3' miRNA: 3'- -UCUCUgUaCCUGGAgUGGUGUGGUau -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 89644 | 0.7 | 0.805335 |
Target: 5'- --uGGCAUauacGGACCgCGCCGCACCGUc -3' miRNA: 3'- ucuCUGUA----CCUGGaGUGGUGUGGUAu -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 46330 | 0.7 | 0.814477 |
Target: 5'- uGGAGACAcGG-CUUCAUCGCGCCc-- -3' miRNA: 3'- -UCUCUGUaCCuGGAGUGGUGUGGuau -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 106916 | 0.69 | 0.857318 |
Target: 5'- cGAGA-GUcGGCCUCGCCGCACCc-- -3' miRNA: 3'- uCUCUgUAcCUGGAGUGGUGUGGuau -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 122106 | 0.68 | 0.880439 |
Target: 5'- aGGGGGCGUGGcacgGCCgcgccagcCGCCGCACCc-- -3' miRNA: 3'- -UCUCUGUACC----UGGa-------GUGGUGUGGuau -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 118115 | 0.68 | 0.887675 |
Target: 5'- uGGGGACGguggGGGCCgCGCgC-CACCAUGg -3' miRNA: 3'- -UCUCUGUa---CCUGGaGUG-GuGUGGUAU- -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 18283 | 0.68 | 0.887675 |
Target: 5'- aAGAGACAcccuUGuGGCCgcCGCCGCGCCc-- -3' miRNA: 3'- -UCUCUGU----AC-CUGGa-GUGGUGUGGuau -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 41533 | 0.67 | 0.914134 |
Target: 5'- -cGGACGcGGGCCUgCGCCcCACCAc- -3' miRNA: 3'- ucUCUGUaCCUGGA-GUGGuGUGGUau -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 64130 | 0.67 | 0.907899 |
Target: 5'- --cGACA-GGugC-CACCACACCAc- -3' miRNA: 3'- ucuCUGUaCCugGaGUGGUGUGGUau -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 31162 | 0.67 | 0.930756 |
Target: 5'- cGGGcCGUGGuacaguaGCCUCACagauaACGCCAUGc -3' miRNA: 3'- uCUCuGUACC-------UGGAGUGg----UGUGGUAU- -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 91570 | 0.67 | 0.925831 |
Target: 5'- cGGAGGCGUc--CCUCGCCugGCUAUc -3' miRNA: 3'- -UCUCUGUAccuGGAGUGGugUGGUAu -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 133535 | 0.66 | 0.950553 |
Target: 5'- cGGGACccGGGCCUCucccCCGC-CCGg- -3' miRNA: 3'- uCUCUGuaCCUGGAGu---GGUGuGGUau -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 15135 | 0.66 | 0.950553 |
Target: 5'- cGGGACGUGcGACCcCAUCccggACACCGa- -3' miRNA: 3'- uCUCUGUAC-CUGGaGUGG----UGUGGUau -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 12008 | 0.66 | 0.94612 |
Target: 5'- -cGGACAgGGACUUCacuaACCAgACCGUGu -3' miRNA: 3'- ucUCUGUaCCUGGAG----UGGUgUGGUAU- -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 48755 | 0.66 | 0.94612 |
Target: 5'- gGGAG-CAUGGGCCUCAUaagcugggUACgGCUAUAa -3' miRNA: 3'- -UCUCuGUACCUGGAGUG--------GUG-UGGUAU- -5' |
|||||||
13129 | 3' | -53.2 | NC_003401.1 | + | 115091 | 0.66 | 0.934958 |
Target: 5'- gGGGGACuugcaccccaccgggGGACCUgCACCcCACCGg- -3' miRNA: 3'- -UCUCUGua-------------CCUGGA-GUGGuGUGGUau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home