miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13129 5' -60.3 NC_003401.1 + 101312 0.66 0.726854
Target:  5'- cGUCCGAGaaGCGGCGGcccUCCAGg-CGa- -3'
miRNA:   3'- -CAGGCUCg-UGCCGCC---AGGUCagGCag -5'
13129 5' -60.3 NC_003401.1 + 83387 0.66 0.721055
Target:  5'- -gCCGuGCACGcggcgaggauauggaGCGG-CCGGUCCGa- -3'
miRNA:   3'- caGGCuCGUGC---------------CGCCaGGUCAGGCag -5'
13129 5' -60.3 NC_003401.1 + 132491 0.66 0.717175
Target:  5'- -cCCGGGC-CGGCGGggcggagggCCGGgagCCGg- -3'
miRNA:   3'- caGGCUCGuGCCGCCa--------GGUCa--GGCag -5'
13129 5' -60.3 NC_003401.1 + 123538 0.66 0.697619
Target:  5'- aUCCGAaaaCACGG-GGUCCAGgggCCG-Cg -3'
miRNA:   3'- cAGGCUc--GUGCCgCCAGGUCa--GGCaG- -5'
13129 5' -60.3 NC_003401.1 + 13666 0.66 0.697619
Target:  5'- gGUCgCGGGC-CaGGCGGUCgCGGUUCagGUCg -3'
miRNA:   3'- -CAG-GCUCGuG-CCGCCAG-GUCAGG--CAG- -5'
13129 5' -60.3 NC_003401.1 + 125905 0.66 0.687758
Target:  5'- cGUCCGAGaACGa-GGUCCAGUuuGcCg -3'
miRNA:   3'- -CAGGCUCgUGCcgCCAGGUCAggCaG- -5'
13129 5' -60.3 NC_003401.1 + 13025 0.66 0.677853
Target:  5'- cUCCGugacggacuGCGUGGCGGUggaCCAggcGUCCGUCa -3'
miRNA:   3'- cAGGCu--------CGUGCCGCCA---GGU---CAGGCAG- -5'
13129 5' -60.3 NC_003401.1 + 132663 0.67 0.627949
Target:  5'- cGUCgGGGCGCGGCGccgCCGGgcucggCCGg- -3'
miRNA:   3'- -CAGgCUCGUGCCGCca-GGUCa-----GGCag -5'
13129 5' -60.3 NC_003401.1 + 47839 0.67 0.607955
Target:  5'- -cCCGGGcCGCGGggaCGGUCC-GUCCGg- -3'
miRNA:   3'- caGGCUC-GUGCC---GCCAGGuCAGGCag -5'
13129 5' -60.3 NC_003401.1 + 10169 0.68 0.558388
Target:  5'- cGUUCGgacgccacgcAGCACGGC-GUCCGGUCC-UCu -3'
miRNA:   3'- -CAGGC----------UCGUGCCGcCAGGUCAGGcAG- -5'
13129 5' -60.3 NC_003401.1 + 117898 0.68 0.548597
Target:  5'- -aCCGGGCGCGGgGGUUCGGcggCgGUg -3'
miRNA:   3'- caGGCUCGUGCCgCCAGGUCa--GgCAg -5'
13129 5' -60.3 NC_003401.1 + 29720 0.7 0.480933
Target:  5'- cGUCCGGGUACGGUGGcuUCgucgaggCAGUgUGUCg -3'
miRNA:   3'- -CAGGCUCGUGCCGCC--AG-------GUCAgGCAG- -5'
13129 5' -60.3 NC_003401.1 + 132592 0.7 0.454467
Target:  5'- -cCCG-GCAUGGCGGUCC--UCCGcCg -3'
miRNA:   3'- caGGCuCGUGCCGCCAGGucAGGCaG- -5'
13129 5' -60.3 NC_003401.1 + 91723 0.7 0.454467
Target:  5'- -cCCGGG-ACGGCauuauUCCGGUCCGUCg -3'
miRNA:   3'- caGGCUCgUGCCGcc---AGGUCAGGCAG- -5'
13129 5' -60.3 NC_003401.1 + 12028 0.72 0.339065
Target:  5'- -gCCGGuCACGGCGGUCuCGGUCCa-- -3'
miRNA:   3'- caGGCUcGUGCCGCCAG-GUCAGGcag -5'
13129 5' -60.3 NC_003401.1 + 122947 0.73 0.317269
Target:  5'- --gCGGGCACGGUGGUUCAGcccCCGUUc -3'
miRNA:   3'- cagGCUCGUGCCGCCAGGUCa--GGCAG- -5'
13129 5' -60.3 NC_003401.1 + 107391 0.78 0.155306
Target:  5'- -aCCGAGCGgGGCGGUCCAccuggagucGUCCGg- -3'
miRNA:   3'- caGGCUCGUgCCGCCAGGU---------CAGGCag -5'
13129 5' -60.3 NC_003401.1 + 52606 1.09 0.000961
Target:  5'- cGUCCGAGCACGGCGGUCCAGUCCGUCg -3'
miRNA:   3'- -CAGGCUCGUGCCGCCAGGUCAGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.