Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13130 | 5' | -53.6 | NC_003401.1 | + | 100108 | 0.7 | 0.801381 |
Target: 5'- cUGCGAG-CCGGCGUAUuguccGAACCUgcaguCGGc -3' miRNA: 3'- -ACGCUCaGGCCGUAUGu----UUUGGG-----GCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 132436 | 0.7 | 0.810388 |
Target: 5'- cGCGGGcCCGGgGggcgcGCGGGggacccucGCCCCGGg -3' miRNA: 3'- aCGCUCaGGCCgUa----UGUUU--------UGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 69747 | 0.7 | 0.819227 |
Target: 5'- gGCgGAGagCCGGCcgccAUGCGGGACUCUGGa -3' miRNA: 3'- aCG-CUCa-GGCCG----UAUGUUUUGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 73378 | 0.69 | 0.852743 |
Target: 5'- --gGAGUCaaaGGCGUACGGAACCguaUGGg -3' miRNA: 3'- acgCUCAGg--CCGUAUGUUUUGGg--GCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 133700 | 0.69 | 0.868289 |
Target: 5'- gGCG-GUCCgGGCGggGgAGAGgCCCGGg -3' miRNA: 3'- aCGCuCAGG-CCGUa-UgUUUUgGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 106870 | 0.69 | 0.875736 |
Target: 5'- uUGCGGGUuuGGCGgguuCGguGAGCaCUCGGg -3' miRNA: 3'- -ACGCUCAggCCGUau--GU--UUUG-GGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 20363 | 0.66 | 0.96375 |
Target: 5'- cGCGGGgCCGaGUGUAUGAAcgccaugguucgcggGCUCCGGg -3' miRNA: 3'- aCGCUCaGGC-CGUAUGUUU---------------UGGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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