miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13130 5' -53.6 NC_003401.1 + 58184 1.1 0.003884
Target:  5'- uUGCGAGUCCGGCAUACAAAACCCCGGc -3'
miRNA:   3'- -ACGCUCAGGCCGUAUGUUUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 22746 0.77 0.459718
Target:  5'- uUGCGAGUCCcaaaacgGGCGUgucuaacuACGGucGCCCCGGg -3'
miRNA:   3'- -ACGCUCAGG-------CCGUA--------UGUUu-UGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 132690 0.74 0.599506
Target:  5'- gGCGGGgcCCGGCGcgggGCGcgaccgaGGGCCCCGGg -3'
miRNA:   3'- aCGCUCa-GGCCGUa---UGU-------UUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 107897 0.74 0.625497
Target:  5'- -cCGGGUCCGGCucggccgccccgaGCGuuGCCCCGGu -3'
miRNA:   3'- acGCUCAGGCCGua-----------UGUuuUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 126263 0.71 0.773447
Target:  5'- cUGC-AGUggCUGGUGUcCGAAACCCCGGg -3'
miRNA:   3'- -ACGcUCA--GGCCGUAuGUUUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 100108 0.7 0.801381
Target:  5'- cUGCGAG-CCGGCGUAUuguccGAACCUgcaguCGGc -3'
miRNA:   3'- -ACGCUCaGGCCGUAUGu----UUUGGG-----GCC- -5'
13130 5' -53.6 NC_003401.1 + 132436 0.7 0.810388
Target:  5'- cGCGGGcCCGGgGggcgcGCGGGggacccucGCCCCGGg -3'
miRNA:   3'- aCGCUCaGGCCgUa----UGUUU--------UGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 69747 0.7 0.819227
Target:  5'- gGCgGAGagCCGGCcgccAUGCGGGACUCUGGa -3'
miRNA:   3'- aCG-CUCa-GGCCG----UAUGUUUUGGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 73378 0.69 0.852743
Target:  5'- --gGAGUCaaaGGCGUACGGAACCguaUGGg -3'
miRNA:   3'- acgCUCAGg--CCGUAUGUUUUGGg--GCC- -5'
13130 5' -53.6 NC_003401.1 + 133700 0.69 0.868289
Target:  5'- gGCG-GUCCgGGCGggGgAGAGgCCCGGg -3'
miRNA:   3'- aCGCuCAGG-CCGUa-UgUUUUgGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 27692 0.69 0.875736
Target:  5'- gGCGAGaCCGGCGUGguGGcUCgCCGGc -3'
miRNA:   3'- aCGCUCaGGCCGUAUguUUuGG-GGCC- -5'
13130 5' -53.6 NC_003401.1 + 106870 0.69 0.875736
Target:  5'- uUGCGGGUuuGGCGgguuCGguGAGCaCUCGGg -3'
miRNA:   3'- -ACGCUCAggCCGUau--GU--UUUG-GGGCC- -5'
13130 5' -53.6 NC_003401.1 + 114927 0.69 0.875736
Target:  5'- gUGCaGGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 114870 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 115155 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 115117 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 115041 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 115003 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 114965 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5'
13130 5' -53.6 NC_003401.1 + 115212 0.69 0.875736
Target:  5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3'
miRNA:   3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.