Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13130 | 5' | -53.6 | NC_003401.1 | + | 113156 | 0.68 | 0.915531 |
Target: 5'- aGCGGGUCaccaGGCAccUAAAuCgCCCGGg -3' miRNA: 3'- aCGCUCAGg---CCGUauGUUUuG-GGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 132610 | 0.68 | 0.896705 |
Target: 5'- gGcCGGGcCCGGCGgaGCGGcacccgggggcGGCCCCGGc -3' miRNA: 3'- aC-GCUCaGGCCGUa-UGUU-----------UUGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 23435 | 0.68 | 0.896705 |
Target: 5'- cGCGGGUuaGcCGUACc-GACCCCGGc -3' miRNA: 3'- aCGCUCAggCcGUAUGuuUUGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 132723 | 0.68 | 0.892 |
Target: 5'- cGCGGccGcCCGGCAUcgggagccgcgcgccGCGgcuugugGGGCCCCGGg -3' miRNA: 3'- aCGCU--CaGGCCGUA---------------UGU-------UUUGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 27717 | 0.68 | 0.889949 |
Target: 5'- aUGCGgacAGUCCGcGCG-----GGCCCCGGu -3' miRNA: 3'- -ACGC---UCAGGC-CGUauguuUUGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 132464 | 0.68 | 0.888569 |
Target: 5'- cGcCGGGcCCGGCcgACucccgggagcGCCCCGGu -3' miRNA: 3'- aC-GCUCaGGCCGuaUGuuu-------UGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 17464 | 0.69 | 0.882958 |
Target: 5'- gGCGGGUgaGGUugACGAAgcugaaucuACCCCGGu -3' miRNA: 3'- aCGCUCAggCCGuaUGUUU---------UGGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 114965 | 0.69 | 0.875736 |
Target: 5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3' miRNA: 3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 106870 | 0.69 | 0.875736 |
Target: 5'- uUGCGGGUuuGGCGgguuCGguGAGCaCUCGGg -3' miRNA: 3'- -ACGCUCAggCCGUau--GU--UUUG-GGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 114927 | 0.69 | 0.875736 |
Target: 5'- gUGCaGGUCCcccgguGGgGUGCAAGucCCCCGGu -3' miRNA: 3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 114870 | 0.69 | 0.875736 |
Target: 5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3' miRNA: 3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 115041 | 0.69 | 0.875736 |
Target: 5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3' miRNA: 3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 27692 | 0.69 | 0.875736 |
Target: 5'- gGCGAGaCCGGCGUGguGGcUCgCCGGc -3' miRNA: 3'- aCGCUCaGGCCGUAUguUUuGG-GGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 115117 | 0.69 | 0.875736 |
Target: 5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3' miRNA: 3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 115155 | 0.69 | 0.875736 |
Target: 5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3' miRNA: 3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 115212 | 0.69 | 0.875736 |
Target: 5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3' miRNA: 3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 115003 | 0.69 | 0.875736 |
Target: 5'- gUGCaAGUCCcccgguGGgGUGCAAGucCCCCGGu -3' miRNA: 3'- -ACGcUCAGG------CCgUAUGUUUu-GGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 133700 | 0.69 | 0.868289 |
Target: 5'- gGCG-GUCCgGGCGggGgAGAGgCCCGGg -3' miRNA: 3'- aCGCuCAGG-CCGUa-UgUUUUgGGGCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 73378 | 0.69 | 0.852743 |
Target: 5'- --gGAGUCaaaGGCGUACGGAACCguaUGGg -3' miRNA: 3'- acgCUCAGg--CCGUAUGUUUUGGg--GCC- -5' |
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13130 | 5' | -53.6 | NC_003401.1 | + | 69747 | 0.7 | 0.819227 |
Target: 5'- gGCgGAGagCCGGCcgccAUGCGGGACUCUGGa -3' miRNA: 3'- aCG-CUCa-GGCCG----UAUGUUUUGGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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