miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13131 3' -53.1 NC_003401.1 + 79900 0.66 0.965678
Target:  5'- --gGUAC-CgGCGGGACGGGUacGAAGu -3'
miRNA:   3'- gagCGUGuGgUGCCCUGUCCA--UUUCu -5'
13131 3' -53.1 NC_003401.1 + 70456 0.66 0.962259
Target:  5'- -aUGCACAauggaCAgagcaauacCGGGACAGGUGAAa- -3'
miRNA:   3'- gaGCGUGUg----GU---------GCCCUGUCCAUUUcu -5'
13131 3' -53.1 NC_003401.1 + 12194 0.66 0.962259
Target:  5'- aCUCGUauuuugucaccGC-CCugGGaGACAcGGUAGAGGu -3'
miRNA:   3'- -GAGCG-----------UGuGGugCC-CUGU-CCAUUUCU- -5'
13131 3' -53.1 NC_003401.1 + 29365 0.66 0.954725
Target:  5'- uUCGCACAgCAC----CAGGUGAAGAa -3'
miRNA:   3'- gAGCGUGUgGUGcccuGUCCAUUUCU- -5'
13131 3' -53.1 NC_003401.1 + 129093 0.66 0.954725
Target:  5'- --aGCAUAacgUCGCGGGGCGGGaguGGGAg -3'
miRNA:   3'- gagCGUGU---GGUGCCCUGUCCau-UUCU- -5'
13131 3' -53.1 NC_003401.1 + 11740 0.67 0.9506
Target:  5'- gUCGCGC-CCuuGGGGguGGUGAc-- -3'
miRNA:   3'- gAGCGUGuGGugCCCUguCCAUUucu -5'
13131 3' -53.1 NC_003401.1 + 41361 0.67 0.9506
Target:  5'- aUCGCGgGCCACGaGGu--GGUGGGGc -3'
miRNA:   3'- gAGCGUgUGGUGC-CCuguCCAUUUCu -5'
13131 3' -53.1 NC_003401.1 + 132788 0.67 0.941618
Target:  5'- -gCGCGgagacCACCuuuCGGGGCGGcGUGGGGGa -3'
miRNA:   3'- gaGCGU-----GUGGu--GCCCUGUC-CAUUUCU- -5'
13131 3' -53.1 NC_003401.1 + 127832 0.67 0.936755
Target:  5'- gCUCGCuuUACCugGGGagcgccGCAGGUAu--- -3'
miRNA:   3'- -GAGCGu-GUGGugCCC------UGUCCAUuucu -5'
13131 3' -53.1 NC_003401.1 + 17024 0.67 0.931641
Target:  5'- gCUCGCcagcuuuugguACACCGCcagguGGGGCAGGUu--GGu -3'
miRNA:   3'- -GAGCG-----------UGUGGUG-----CCCUGUCCAuuuCU- -5'
13131 3' -53.1 NC_003401.1 + 119844 0.67 0.926274
Target:  5'- -cCGC-CACCA-GGGACGGGggcAGAc -3'
miRNA:   3'- gaGCGuGUGGUgCCCUGUCCauuUCU- -5'
13131 3' -53.1 NC_003401.1 + 14438 0.68 0.920656
Target:  5'- -aCGUACGCgGC-GGACAGGUGugccGAGGu -3'
miRNA:   3'- gaGCGUGUGgUGcCCUGUCCAU----UUCU- -5'
13131 3' -53.1 NC_003401.1 + 7077 0.69 0.866838
Target:  5'- aCUCGCACGcguCCugGGGACAcuc-GAGAa -3'
miRNA:   3'- -GAGCGUGU---GGugCCCUGUccauUUCU- -5'
13131 3' -53.1 NC_003401.1 + 93073 0.69 0.866838
Target:  5'- uUUGCAgGCCACGGccGACAGGauucUAAAGu -3'
miRNA:   3'- gAGCGUgUGGUGCC--CUGUCC----AUUUCu -5'
13131 3' -53.1 NC_003401.1 + 64191 0.7 0.851059
Target:  5'- -cCGCACG-CACGGGAC-GGUGAGu- -3'
miRNA:   3'- gaGCGUGUgGUGCCCUGuCCAUUUcu -5'
13131 3' -53.1 NC_003401.1 + 132529 0.7 0.842852
Target:  5'- -gCGCGCGgCGCGGGGCGGccGGGGGc -3'
miRNA:   3'- gaGCGUGUgGUGCCCUGUCcaUUUCU- -5'
13131 3' -53.1 NC_003401.1 + 122991 0.7 0.834444
Target:  5'- -aCGCACcCCA-GGGACGcGGUAGAGu -3'
miRNA:   3'- gaGCGUGuGGUgCCCUGU-CCAUUUCu -5'
13131 3' -53.1 NC_003401.1 + 103669 0.71 0.770634
Target:  5'- gUUGCGCACCAUGGG-CAGGc----- -3'
miRNA:   3'- gAGCGUGUGGUGCCCuGUCCauuucu -5'
13131 3' -53.1 NC_003401.1 + 108488 0.72 0.710751
Target:  5'- cCUgGC-CACCACcuGGGACcaaacAGGUAGAGAg -3'
miRNA:   3'- -GAgCGuGUGGUG--CCCUG-----UCCAUUUCU- -5'
13131 3' -53.1 NC_003401.1 + 104935 0.73 0.669286
Target:  5'- --gGCACGCCGCGGGGCAGa------ -3'
miRNA:   3'- gagCGUGUGGUGCCCUGUCcauuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.