miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13132 3' -61.3 NC_003401.1 + 132513 0.66 0.646486
Target:  5'- gGCCGgGggcGGcGG-CCGCGGgCCCGg -3'
miRNA:   3'- -UGGCgCaaaCCaCCaGGCGCC-GGGCa -5'
13132 3' -61.3 NC_003401.1 + 132443 0.66 0.646486
Target:  5'- gGCCGCccccgGGUGccgcUCCGCcgGGCCCGg -3'
miRNA:   3'- -UGGCGcaaa-CCACc---AGGCG--CCGGGCa -5'
13132 3' -61.3 NC_003401.1 + 100908 0.67 0.616683
Target:  5'- uGCCGgGUcuggguagcuugUcGGUGGuUCCGCGcCCCGUa -3'
miRNA:   3'- -UGGCgCA------------AaCCACC-AGGCGCcGGGCA- -5'
13132 3' -61.3 NC_003401.1 + 132654 0.67 0.596857
Target:  5'- cGCCGcCGggagGGgGG-CCGgGGCCCGg -3'
miRNA:   3'- -UGGC-GCaaa-CCaCCaGGCgCCGGGCa -5'
13132 3' -61.3 NC_003401.1 + 119084 0.67 0.586978
Target:  5'- cACCgGCGUUaaccgGGUGcGUUgGCGGCCaCGa -3'
miRNA:   3'- -UGG-CGCAAa----CCAC-CAGgCGCCGG-GCa -5'
13132 3' -61.3 NC_003401.1 + 14297 0.67 0.586978
Target:  5'- uCUGUGUgagUGGgggcgUGGUCCGCgagGGCCCa- -3'
miRNA:   3'- uGGCGCAa--ACC-----ACCAGGCG---CCGGGca -5'
13132 3' -61.3 NC_003401.1 + 132406 0.67 0.586978
Target:  5'- cGCCccggGCGcaagaUGGcGG-CCGCGGCCCGg -3'
miRNA:   3'- -UGG----CGCaa---ACCaCCaGGCGCCGGGCa -5'
13132 3' -61.3 NC_003401.1 + 20259 0.67 0.577129
Target:  5'- cGCCGCGgccauUGGcUCCGCGGUgaCCGUg -3'
miRNA:   3'- -UGGCGCaaaccACC-AGGCGCCG--GGCA- -5'
13132 3' -61.3 NC_003401.1 + 41360 0.68 0.547829
Target:  5'- aAUCGCGggccacgaggUGGUGGggCGCaGGCCCGc -3'
miRNA:   3'- -UGGCGCaa--------ACCACCagGCG-CCGGGCa -5'
13132 3' -61.3 NC_003401.1 + 132696 0.68 0.538163
Target:  5'- cGCCGCGgcuugUGG-GGccCCG-GGCCCGg -3'
miRNA:   3'- -UGGCGCaa---ACCaCCa-GGCgCCGGGCa -5'
13132 3' -61.3 NC_003401.1 + 47843 0.69 0.490815
Target:  5'- gGCCGCGg--GGacGGUCCGUccGGgCCGUg -3'
miRNA:   3'- -UGGCGCaaaCCa-CCAGGCG--CCgGGCA- -5'
13132 3' -61.3 NC_003401.1 + 97500 0.69 0.44461
Target:  5'- uCUGCGcUUUGGUGGUCUGUaaugacuGGCuCCGg -3'
miRNA:   3'- uGGCGC-AAACCACCAGGCG-------CCG-GGCa -5'
13132 3' -61.3 NC_003401.1 + 21352 0.7 0.410974
Target:  5'- aGCUGCGUUacgUGGUGGaUCUaauuaacagGCGGCCCc- -3'
miRNA:   3'- -UGGCGCAA---ACCACC-AGG---------CGCCGGGca -5'
13132 3' -61.3 NC_003401.1 + 122571 0.73 0.271532
Target:  5'- cGCCGCGcc-GGUGaG-CCGCGGCCCu- -3'
miRNA:   3'- -UGGCGCaaaCCAC-CaGGCGCCGGGca -5'
13132 3' -61.3 NC_003401.1 + 20749 0.74 0.259294
Target:  5'- cCCGCGUUgGG-GGUUgGCGGCCgGUg -3'
miRNA:   3'- uGGCGCAAaCCaCCAGgCGCCGGgCA- -5'
13132 3' -61.3 NC_003401.1 + 10829 0.82 0.073662
Target:  5'- uGCCGCGguugccgccacggUGGUGGUCCGUGGCuCCGa -3'
miRNA:   3'- -UGGCGCaa-----------ACCACCAGGCGCCG-GGCa -5'
13132 3' -61.3 NC_003401.1 + 64090 1.06 0.001427
Target:  5'- gACCGCGUUUGGUGGUCCGCGGCCCGUu -3'
miRNA:   3'- -UGGCGCAAACCACCAGGCGCCGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.