miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13132 5' -58.7 NC_003401.1 + 77092 0.66 0.750924
Target:  5'- --uUUGGCC-ACACUGCggucGCugCCCAa -3'
miRNA:   3'- aauGACCGGuUGUGGCG----CGugGGGUc -5'
13132 5' -58.7 NC_003401.1 + 30149 0.66 0.750924
Target:  5'- --cCUGGCCGccauccuuucGCACCcauCGCcCCCCGGu -3'
miRNA:   3'- aauGACCGGU----------UGUGGc--GCGuGGGGUC- -5'
13132 5' -58.7 NC_003401.1 + 14030 0.66 0.750924
Target:  5'- -cGC-GGCCAAUcgauUCGCGCACCCg-- -3'
miRNA:   3'- aaUGaCCGGUUGu---GGCGCGUGGGguc -5'
13132 5' -58.7 NC_003401.1 + 109058 0.66 0.741176
Target:  5'- -gACcGGCCGAUAUCGUGCAgCCgCGa -3'
miRNA:   3'- aaUGaCCGGUUGUGGCGCGUgGG-GUc -5'
13132 5' -58.7 NC_003401.1 + 18151 0.66 0.721402
Target:  5'- -gACUGGCCcaggacuaucucGGCGuuGgGguCCCCGGg -3'
miRNA:   3'- aaUGACCGG------------UUGUggCgCguGGGGUC- -5'
13132 5' -58.7 NC_003401.1 + 132731 0.66 0.715405
Target:  5'- aUGCcgGGCgCGGCcgcccggcaucgggaGCCGCGCGCCgCGGc -3'
miRNA:   3'- aAUGa-CCG-GUUG---------------UGGCGCGUGGgGUC- -5'
13132 5' -58.7 NC_003401.1 + 74492 0.66 0.711393
Target:  5'- -aACgGGCCGACgagACCGUGuCACUCCuGg -3'
miRNA:   3'- aaUGaCCGGUUG---UGGCGC-GUGGGGuC- -5'
13132 5' -58.7 NC_003401.1 + 118109 0.66 0.701317
Target:  5'- ----cGGUgGGgGCCGCGCgccaccauggGCCCCAGa -3'
miRNA:   3'- aaugaCCGgUUgUGGCGCG----------UGGGGUC- -5'
13132 5' -58.7 NC_003401.1 + 132220 0.66 0.701317
Target:  5'- -gGCgcccGGCCGGCGCCGCcGCcggGCCgCGGc -3'
miRNA:   3'- aaUGa---CCGGUUGUGGCG-CG---UGGgGUC- -5'
13132 5' -58.7 NC_003401.1 + 77292 0.66 0.698282
Target:  5'- -aGCUcuccGGCUAcuuuguuaauuuuaACACCGCGUaACCCCAa -3'
miRNA:   3'- aaUGA----CCGGU--------------UGUGGCGCG-UGGGGUc -5'
13132 5' -58.7 NC_003401.1 + 133488 0.67 0.691181
Target:  5'- cUGCcGGCCAGCugCGUGCGagggcgUCCgAGg -3'
miRNA:   3'- aAUGaCCGGUUGugGCGCGU------GGGgUC- -5'
13132 5' -58.7 NC_003401.1 + 773 0.67 0.691181
Target:  5'- cUGCcGGCCAGCugCGUGCGagggcgUCCgAGg -3'
miRNA:   3'- aAUGaCCGGUUGugGCGCGU------GGGgUC- -5'
13132 5' -58.7 NC_003401.1 + 116576 0.67 0.680995
Target:  5'- -gGgaGGCUGGCAUUGCGCAauauUCCCAGc -3'
miRNA:   3'- aaUgaCCGGUUGUGGCGCGU----GGGGUC- -5'
13132 5' -58.7 NC_003401.1 + 124645 0.67 0.670769
Target:  5'- --uCUGGCCGAaa-CGUGCuACCUCAGg -3'
miRNA:   3'- aauGACCGGUUgugGCGCG-UGGGGUC- -5'
13132 5' -58.7 NC_003401.1 + 71020 0.67 0.670769
Target:  5'- -cGCUGGCCugcgGCACCGUGUccguGCUUUAGu -3'
miRNA:   3'- aaUGACCGGu---UGUGGCGCG----UGGGGUC- -5'
13132 5' -58.7 NC_003401.1 + 17653 0.67 0.669744
Target:  5'- ----gGGCCAcgcGCGCCGCGUccgcgucGCCgCCGGa -3'
miRNA:   3'- aaugaCCGGU---UGUGGCGCG-------UGG-GGUC- -5'
13132 5' -58.7 NC_003401.1 + 132500 0.67 0.660511
Target:  5'- ----cGGCCGagcccggcgGCGCCGCGCcccgacgccCCCCGGg -3'
miRNA:   3'- aaugaCCGGU---------UGUGGCGCGu--------GGGGUC- -5'
13132 5' -58.7 NC_003401.1 + 17192 0.67 0.65023
Target:  5'- --gUUGGCC-GCGCCGUGCACCa--- -3'
miRNA:   3'- aauGACCGGuUGUGGCGCGUGGgguc -5'
13132 5' -58.7 NC_003401.1 + 13142 0.67 0.65023
Target:  5'- -aACuUGGCCGACACCG-GCcGCCCg-- -3'
miRNA:   3'- aaUG-ACCGGUUGUGGCgCG-UGGGguc -5'
13132 5' -58.7 NC_003401.1 + 10950 0.67 0.65023
Target:  5'- gUGCguuuGCCAACACCGCGCucugcguCUgCAGa -3'
miRNA:   3'- aAUGac--CGGUUGUGGCGCGu------GGgGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.