miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13133 5' -58.3 NC_003401.1 + 123627 0.66 0.821387
Target:  5'- ---cCGGGGUGuCGCCAggaaacCgCGUCUCCCc -3'
miRNA:   3'- aggaGUUCCGC-GCGGUa-----G-GCAGAGGG- -5'
13133 5' -58.3 NC_003401.1 + 127687 0.66 0.804152
Target:  5'- gUCUCGcgGGGCggccuGCGCCucUuuGUCUCUCa -3'
miRNA:   3'- aGGAGU--UCCG-----CGCGGu-AggCAGAGGG- -5'
13133 5' -58.3 NC_003401.1 + 105095 0.66 0.795303
Target:  5'- aUCaUCAGGG-GCGCUAgcagagCCGUgacgCUCCCg -3'
miRNA:   3'- -AGgAGUUCCgCGCGGUa-----GGCA----GAGGG- -5'
13133 5' -58.3 NC_003401.1 + 132298 0.66 0.78631
Target:  5'- cCCgcgCGccGGGCGcCGCCGgccucccCCGgCUCCCg -3'
miRNA:   3'- aGGa--GU--UCCGC-GCGGUa------GGCaGAGGG- -5'
13133 5' -58.3 NC_003401.1 + 102475 0.67 0.739488
Target:  5'- -aCUCAAGGC-CGCCAUCCacgaCCUg -3'
miRNA:   3'- agGAGUUCCGcGCGGUAGGcagaGGG- -5'
13133 5' -58.3 NC_003401.1 + 16749 0.67 0.729814
Target:  5'- gUCCUCAAcGCGaGCUAUCUGgacCUCCg -3'
miRNA:   3'- -AGGAGUUcCGCgCGGUAGGCa--GAGGg -5'
13133 5' -58.3 NC_003401.1 + 70865 0.67 0.720058
Target:  5'- aCCUUGAGuagucuauuGuCGCGCCA-CCGUCUCUg -3'
miRNA:   3'- aGGAGUUC---------C-GCGCGGUaGGCAGAGGg -5'
13133 5' -58.3 NC_003401.1 + 94573 0.67 0.720058
Target:  5'- uUCCUCcuGGcCGCGCCuaaCG-CUCUCg -3'
miRNA:   3'- -AGGAGuuCC-GCGCGGuagGCaGAGGG- -5'
13133 5' -58.3 NC_003401.1 + 10880 0.68 0.690384
Target:  5'- cUCCUCA-GGCgGCGCUucGUCgCGcUUCCCu -3'
miRNA:   3'- -AGGAGUuCCG-CGCGG--UAG-GCaGAGGG- -5'
13133 5' -58.3 NC_003401.1 + 71971 0.68 0.67035
Target:  5'- gCgUgGGGGCGCGCguUCCaggGUgUCCCa -3'
miRNA:   3'- aGgAgUUCCGCGCGguAGG---CAgAGGG- -5'
13133 5' -58.3 NC_003401.1 + 104831 0.69 0.609777
Target:  5'- gUCCaUCGccGGGCGCGCCGgaaCGUUUUCg -3'
miRNA:   3'- -AGG-AGU--UCCGCGCGGUag-GCAGAGGg -5'
13133 5' -58.3 NC_003401.1 + 53929 0.71 0.501198
Target:  5'- uUCCgacAGGCGCGUCAggCGcCUCCCc -3'
miRNA:   3'- -AGGaguUCCGCGCGGUagGCaGAGGG- -5'
13133 5' -58.3 NC_003401.1 + 101301 0.73 0.416485
Target:  5'- gUCUCGAGcGaucuguucuagaaaCGCGCCAUCCGUgUCCUc -3'
miRNA:   3'- aGGAGUUC-C--------------GCGCGGUAGGCAgAGGG- -5'
13133 5' -58.3 NC_003401.1 + 128560 0.73 0.40196
Target:  5'- cCCUgGAGGUGCGCCGaCCGagUUUCCa -3'
miRNA:   3'- aGGAgUUCCGCGCGGUaGGCa-GAGGG- -5'
13133 5' -58.3 NC_003401.1 + 17810 0.74 0.345664
Target:  5'- cCCUcCGAGcGCGCGCCG-CCGuUCUCgCCg -3'
miRNA:   3'- aGGA-GUUC-CGCGCGGUaGGC-AGAG-GG- -5'
13133 5' -58.3 NC_003401.1 + 64700 1.11 0.001217
Target:  5'- gUCCUCAAGGCGCGCCAUCCGUCUCCCc -3'
miRNA:   3'- -AGGAGUUCCGCGCGGUAGGCAGAGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.