miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13134 5' -54.8 NC_003401.1 + 119608 0.66 0.94086
Target:  5'- cGGGAACAUGgGuccgGUGCGGcGCUc--- -3'
miRNA:   3'- -CCCUUGUACgCua--UACGCC-CGGuccc -5'
13134 5' -54.8 NC_003401.1 + 29983 0.66 0.94086
Target:  5'- gGGGGGCgauggGUGCGAaaggAUG-GcGGCCAGGc -3'
miRNA:   3'- -CCCUUG-----UACGCUa---UACgC-CCGGUCCc -5'
13134 5' -54.8 NC_003401.1 + 27532 0.66 0.936043
Target:  5'- cGGGGGCcgGC--UGUGCGcuGGCCuccaccGGGg -3'
miRNA:   3'- -CCCUUGuaCGcuAUACGC--CCGGu-----CCC- -5'
13134 5' -54.8 NC_003401.1 + 133709 0.66 0.936043
Target:  5'- cGGGugcCcgGCGGUc--CGGGCgGGGGa -3'
miRNA:   3'- -CCCuu-GuaCGCUAuacGCCCGgUCCC- -5'
13134 5' -54.8 NC_003401.1 + 28955 0.66 0.935547
Target:  5'- cGGGGACGUGCucUAUGUuuaucgguagaGGGUccguauacgggagCAGGGu -3'
miRNA:   3'- -CCCUUGUACGcuAUACG-----------CCCG-------------GUCCC- -5'
13134 5' -54.8 NC_003401.1 + 84363 0.66 0.925678
Target:  5'- uGGAGCAUGgGGUcGUGCGGacGCaCGGuGGc -3'
miRNA:   3'- cCCUUGUACgCUA-UACGCC--CG-GUC-CC- -5'
13134 5' -54.8 NC_003401.1 + 107253 0.66 0.920131
Target:  5'- gGGGAGCGUguauugaaugcGCGGguuugAUGCGguuGGUUGGGGg -3'
miRNA:   3'- -CCCUUGUA-----------CGCUa----UACGC---CCGGUCCC- -5'
13134 5' -54.8 NC_003401.1 + 14313 0.67 0.908308
Target:  5'- cGGGAGCAucggugccucugUGUGA-GUGgGGGCguGGu -3'
miRNA:   3'- -CCCUUGU------------ACGCUaUACgCCCGguCCc -5'
13134 5' -54.8 NC_003401.1 + 62981 0.67 0.902035
Target:  5'- cGGGAGCguuuuccaaGUGUGcUGUGCGGGggaCUAuGGGg -3'
miRNA:   3'- -CCCUUG---------UACGCuAUACGCCC---GGU-CCC- -5'
13134 5' -54.8 NC_003401.1 + 5865 0.68 0.874605
Target:  5'- --uGGCGUGCGAU-UGU-GGCCGGGGc -3'
miRNA:   3'- cccUUGUACGCUAuACGcCCGGUCCC- -5'
13134 5' -54.8 NC_003401.1 + 105136 0.68 0.859546
Target:  5'- uGGAGCGUcugaGCGAUGU-CGGGCCAc-- -3'
miRNA:   3'- cCCUUGUA----CGCUAUAcGCCCGGUccc -5'
13134 5' -54.8 NC_003401.1 + 92858 0.68 0.859546
Target:  5'- aGGGACAcGCGuuugggggGCGGGCaccgaaCAGGGg -3'
miRNA:   3'- cCCUUGUaCGCuaua----CGCCCG------GUCCC- -5'
13134 5' -54.8 NC_003401.1 + 132739 0.68 0.8517
Target:  5'- cGGGAAaacGCGAggggaGCGGGggaCAGGGg -3'
miRNA:   3'- -CCCUUguaCGCUaua--CGCCCg--GUCCC- -5'
13134 5' -54.8 NC_003401.1 + 4 0.68 0.8517
Target:  5'- cGGGAAaacGCGAggggaGCGGGggaCAGGGg -3'
miRNA:   3'- -CCCUUguaCGCUaua--CGCCCg--GUCCC- -5'
13134 5' -54.8 NC_003401.1 + 87968 0.68 0.835406
Target:  5'- uGGcGGGCGUGCGGggAUGCGGcCCAGuGa -3'
miRNA:   3'- -CC-CUUGUACGCUa-UACGCCcGGUC-Cc -5'
13134 5' -54.8 NC_003401.1 + 23262 0.69 0.826972
Target:  5'- ----cCGUGUGuuucGCGGGCCGGGGu -3'
miRNA:   3'- cccuuGUACGCuauaCGCCCGGUCCC- -5'
13134 5' -54.8 NC_003401.1 + 31366 0.69 0.818358
Target:  5'- cGGGGAUcUGCGGUcccCGGGC-AGGGa -3'
miRNA:   3'- -CCCUUGuACGCUAuacGCCCGgUCCC- -5'
13134 5' -54.8 NC_003401.1 + 132415 0.7 0.763356
Target:  5'- cGGGGCcgGgGGUcccgcgGgGGGCCGGGGc -3'
miRNA:   3'- cCCUUGuaCgCUAua----CgCCCGGUCCC- -5'
13134 5' -54.8 NC_003401.1 + 132459 0.7 0.761439
Target:  5'- gGGGAgGCcgGCGGcgcccggcgcGCGGGCCcGGGGg -3'
miRNA:   3'- -CCCU-UGuaCGCUaua-------CGCCCGG-UCCC- -5'
13134 5' -54.8 NC_003401.1 + 118706 0.7 0.75372
Target:  5'- gGGGAAaGUGCucacaaGAcauccccgGUGGGCCAGGGg -3'
miRNA:   3'- -CCCUUgUACG------CUaua-----CGCCCGGUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.