miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13135 3' -62.5 NC_003401.1 + 15267 0.66 0.586512
Target:  5'- --aCGCUGaaCAGUauguuugGCGGAUuGGGCGCg -3'
miRNA:   3'- uuaGCGACg-GUCG-------CGCCUGcCCCGCG- -5'
13135 3' -62.5 NC_003401.1 + 23479 0.66 0.577618
Target:  5'- ---gGgaGCCgGGUGCaGGGCgGGGGCGUg -3'
miRNA:   3'- uuagCgaCGG-UCGCG-CCUG-CCCCGCG- -5'
13135 3' -62.5 NC_003401.1 + 132498 0.66 0.557967
Target:  5'- --cCGCggGCCcGgGCcGGCGGGGCGg -3'
miRNA:   3'- uuaGCGa-CGGuCgCGcCUGCCCCGCg -5'
13135 3' -62.5 NC_003401.1 + 27705 0.66 0.557967
Target:  5'- uGGUgGCUcGCCGGCuGCGGggGCGGuGGuUGCg -3'
miRNA:   3'- -UUAgCGA-CGGUCG-CGCC--UGCC-CC-GCG- -5'
13135 3' -62.5 NC_003401.1 + 58204 0.66 0.547239
Target:  5'- --cUGCUGCCA-CGCGcGugGGuaaaaucGGCGCc -3'
miRNA:   3'- uuaGCGACGGUcGCGC-CugCC-------CCGCG- -5'
13135 3' -62.5 NC_003401.1 + 16109 0.67 0.509782
Target:  5'- uAGUCGU--CCGGCGUcaGGuuGGGGUGCa -3'
miRNA:   3'- -UUAGCGacGGUCGCG--CCugCCCCGCG- -5'
13135 3' -62.5 NC_003401.1 + 105212 0.67 0.504113
Target:  5'- cAUCGCcaagaauguguuaaaUGCCGcgucccgguuuGCGUGGGCGGuGGUGUg -3'
miRNA:   3'- uUAGCG---------------ACGGU-----------CGCGCCUGCC-CCGCG- -5'
13135 3' -62.5 NC_003401.1 + 81207 0.67 0.500348
Target:  5'- --aCGCgugGCCAGCGaGGACGGGaCa- -3'
miRNA:   3'- uuaGCGa--CGGUCGCgCCUGCCCcGcg -5'
13135 3' -62.5 NC_003401.1 + 132682 0.67 0.500348
Target:  5'- ---gGC-GCCucGGCGgGGcccggcGCGGGGCGCg -3'
miRNA:   3'- uuagCGaCGG--UCGCgCC------UGCCCCGCG- -5'
13135 3' -62.5 NC_003401.1 + 11242 0.67 0.481716
Target:  5'- -cUCGaaacacuggGCCAGCGCGacguuGGCGGGGC-Cg -3'
miRNA:   3'- uuAGCga-------CGGUCGCGC-----CUGCCCCGcG- -5'
13135 3' -62.5 NC_003401.1 + 132411 0.68 0.463427
Target:  5'- -uUCGCgggGCCGGggguccCGCGGGgggcCGGGGcCGCc -3'
miRNA:   3'- uuAGCGa--CGGUC------GCGCCU----GCCCC-GCG- -5'
13135 3' -62.5 NC_003401.1 + 92639 0.68 0.463427
Target:  5'- --gUGCUcuCCAGCGUgggGGACGcGGGCGUu -3'
miRNA:   3'- uuaGCGAc-GGUCGCG---CCUGC-CCCGCG- -5'
13135 3' -62.5 NC_003401.1 + 771 0.68 0.427984
Target:  5'- ---gGCUGCCGGCcagcuGCGuGCGaGGGCGUc -3'
miRNA:   3'- uuagCGACGGUCG-----CGCcUGC-CCCGCG- -5'
13135 3' -62.5 NC_003401.1 + 133486 0.68 0.427984
Target:  5'- ---gGCUGCCGGCcagcuGCGuGCGaGGGCGUc -3'
miRNA:   3'- uuagCGACGGUCG-----CGCcUGC-CCCGCG- -5'
13135 3' -62.5 NC_003401.1 + 62638 0.68 0.427984
Target:  5'- ---gGUUGCCAGaGCGGccgggaGGGGUGCa -3'
miRNA:   3'- uuagCGACGGUCgCGCCug----CCCCGCG- -5'
13135 3' -62.5 NC_003401.1 + 107786 0.68 0.427984
Target:  5'- --cCGC-GCCcgguGGCGCGGAccCGGGaGCGUg -3'
miRNA:   3'- uuaGCGaCGG----UCGCGCCU--GCCC-CGCG- -5'
13135 3' -62.5 NC_003401.1 + 19641 0.69 0.402479
Target:  5'- cGAUCGCgcGCCcuggAGCuGcCGGGCGGGGUGa -3'
miRNA:   3'- -UUAGCGa-CGG----UCG-C-GCCUGCCCCGCg -5'
13135 3' -62.5 NC_003401.1 + 132450 0.7 0.346865
Target:  5'- ---gGCggcGCCcggcGCGCGGGCccggGGGGCGCg -3'
miRNA:   3'- uuagCGa--CGGu---CGCGCCUG----CCCCGCG- -5'
13135 3' -62.5 NC_003401.1 + 132538 0.7 0.339383
Target:  5'- ---aGCgGCCcggcGCGCGGcGCGGGGCGg -3'
miRNA:   3'- uuagCGaCGGu---CGCGCC-UGCCCCGCg -5'
13135 3' -62.5 NC_003401.1 + 123382 0.7 0.324773
Target:  5'- -uUCGCUGCaCAGCuCGGGCGGcaCGCc -3'
miRNA:   3'- uuAGCGACG-GUCGcGCCUGCCccGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.