miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13135 5' -55.6 NC_003401.1 + 118441 0.66 0.898939
Target:  5'- cGCGgGCCCcgGGcUCGGGAgCCGGGGAg- -3'
miRNA:   3'- -CGCgCGGG--UCaGGUCCU-GGUCUUUau -5'
13135 5' -55.6 NC_003401.1 + 19703 0.66 0.898939
Target:  5'- aGCuGCGuCCCGGUgcugauguacaCCGGGGCCuGGGAc- -3'
miRNA:   3'- -CG-CGC-GGGUCA-----------GGUCCUGGuCUUUau -5'
13135 5' -55.6 NC_003401.1 + 11088 0.66 0.898939
Target:  5'- cGCGCugGCCCAGuguuUCgAGGcgGCCGGAAu-- -3'
miRNA:   3'- -CGCG--CGGGUC----AGgUCC--UGGUCUUuau -5'
13135 5' -55.6 NC_003401.1 + 133709 0.66 0.878145
Target:  5'- cGgGUGCCCggcGGUCCGGG-CgGGGGAg- -3'
miRNA:   3'- -CgCGCGGG---UCAGGUCCuGgUCUUUau -5'
13135 5' -55.6 NC_003401.1 + 132700 0.66 0.878145
Target:  5'- cGCGCGCCgCGGcuuguggggccCCGGGcCCGGggGg- -3'
miRNA:   3'- -CGCGCGG-GUCa----------GGUCCuGGUCuuUau -5'
13135 5' -55.6 NC_003401.1 + 125078 0.66 0.863133
Target:  5'- -gGCGCCC-GUCCGGuGACguGAu--- -3'
miRNA:   3'- cgCGCGGGuCAGGUC-CUGguCUuuau -5'
13135 5' -55.6 NC_003401.1 + 125710 0.67 0.855299
Target:  5'- -aGCGCCCuGggaagCgGGGcACCGGggGUGa -3'
miRNA:   3'- cgCGCGGGuCa----GgUCC-UGGUCuuUAU- -5'
13135 5' -55.6 NC_003401.1 + 28849 0.67 0.821931
Target:  5'- cGCGaGCCguGacgCCAGGGCCAaGAAAUc -3'
miRNA:   3'- -CGCgCGGguCa--GGUCCUGGU-CUUUAu -5'
13135 5' -55.6 NC_003401.1 + 132450 0.68 0.794994
Target:  5'- gGCgGCGCCCGGcgCgCGGGcCCGGggGg- -3'
miRNA:   3'- -CG-CGCGGGUCa-G-GUCCuGGUCuuUau -5'
13135 5' -55.6 NC_003401.1 + 14878 0.68 0.776255
Target:  5'- cGCGCGCgCCAcGcCCcgccuGGcGGCCAGAGAUGc -3'
miRNA:   3'- -CGCGCG-GGU-CaGG-----UC-CUGGUCUUUAU- -5'
13135 5' -55.6 NC_003401.1 + 20544 0.69 0.75698
Target:  5'- cCGCGCCUcucuugaCAGGACCAGggGg- -3'
miRNA:   3'- cGCGCGGGucag---GUCCUGGUCuuUau -5'
13135 5' -55.6 NC_003401.1 + 104681 0.7 0.696712
Target:  5'- gGCGCGCCCGGcgauggacUCGGuGGCCAGAc--- -3'
miRNA:   3'- -CGCGCGGGUCa-------GGUC-CUGGUCUuuau -5'
13135 5' -55.6 NC_003401.1 + 43045 0.71 0.634405
Target:  5'- uCGCGCCaGGUCgCAGuGCCAGGGAUGu -3'
miRNA:   3'- cGCGCGGgUCAG-GUCcUGGUCUUUAU- -5'
13135 5' -55.6 NC_003401.1 + 132497 0.72 0.582337
Target:  5'- cGCGgGCCCGGgCCggcggggcggAGGGCCGGGAGc- -3'
miRNA:   3'- -CGCgCGGGUCaGG----------UCCUGGUCUUUau -5'
13135 5' -55.6 NC_003401.1 + 132390 0.73 0.491473
Target:  5'- cGCGCGCCgGGccgcuuucgguUCgCGGGGCCGGggGUc -3'
miRNA:   3'- -CGCGCGGgUC-----------AG-GUCCUGGUCuuUAu -5'
13135 5' -55.6 NC_003401.1 + 83710 0.75 0.416583
Target:  5'- aGCuuGCCCGcucUCCGGGACCAGAGAg- -3'
miRNA:   3'- -CGcgCGGGUc--AGGUCCUGGUCUUUau -5'
13135 5' -55.6 NC_003401.1 + 72502 1.09 0.002517
Target:  5'- gGCGCGCCCAGUCCAGGACCAGAAAUAa -3'
miRNA:   3'- -CGCGCGGGUCAGGUCCUGGUCUUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.