Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13136 | 3' | -60.4 | NC_003401.1 | + | 4800 | 0.68 | 0.57721 |
Target: 5'- aGCCUUUACCAUGaAUCGCUCaaaaugaGGCUuuACa -3' miRNA: 3'- -UGGAAGUGGUAC-UGGCGGGg------CCGG--UG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 6056 | 0.66 | 0.645563 |
Target: 5'- cGCCUggauggauuaugUACCccuUGugUuauuuucaGCCCCGGCCACa -3' miRNA: 3'- -UGGAa-----------GUGGu--ACugG--------CGGGGCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 11683 | 0.66 | 0.677706 |
Target: 5'- -gUUUCGCgUGUGcAgCGCCUCGGCCACc -3' miRNA: 3'- ugGAAGUG-GUAC-UgGCGGGGCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 13503 | 0.66 | 0.667688 |
Target: 5'- gACCUgaACCGcGACCG-CCUGGcCCGCg -3' miRNA: 3'- -UGGAagUGGUaCUGGCgGGGCC-GGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 16299 | 0.66 | 0.651606 |
Target: 5'- gACCUgcgaacgcgucucggUCGCgagGUGACCGCCCgucaCGGCgCGCg -3' miRNA: 3'- -UGGA---------------AGUGg--UACUGGCGGG----GCCG-GUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 18305 | 0.71 | 0.408842 |
Target: 5'- gACCagaaaCGCCA-GAUCGCCCCgagcGGCCGCu -3' miRNA: 3'- -UGGaa---GUGGUaCUGGCGGGG----CCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 21603 | 0.69 | 0.499126 |
Target: 5'- uGCagcUCGCCGUGGUCGCCgCGGCaCGCg -3' miRNA: 3'- -UGga-AGUGGUACUGGCGGgGCCG-GUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 22615 | 0.67 | 0.597226 |
Target: 5'- cACCagCGCCAcGcucGCCGUgCUCGGCCACg -3' miRNA: 3'- -UGGaaGUGGUaC---UGGCG-GGGCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 23698 | 0.67 | 0.597226 |
Target: 5'- uAUCUUCGCCAgcGCCaCCaCCGGCCu- -3' miRNA: 3'- -UGGAAGUGGUacUGGcGG-GGCCGGug -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 56458 | 0.66 | 0.687687 |
Target: 5'- aGCCacggCACCAUGAaCGCCCgggaGGUgGCa -3' miRNA: 3'- -UGGaa--GUGGUACUgGCGGGg---CCGgUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 62101 | 0.66 | 0.657643 |
Target: 5'- aACC-UCACCGUGACCGagUgGGUgACa -3' miRNA: 3'- -UGGaAGUGGUACUGGCggGgCCGgUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 64123 | 0.66 | 0.687687 |
Target: 5'- uGCCaccaCACCAccGAgCGCgCCCGcGCCACu -3' miRNA: 3'- -UGGaa--GUGGUa-CUgGCG-GGGC-CGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 72366 | 0.66 | 0.657643 |
Target: 5'- cGCCUcCuCC-UGAgCGCCCCGuCCGCg -3' miRNA: 3'- -UGGAaGuGGuACUgGCGGGGCcGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 72488 | 0.74 | 0.274567 |
Target: 5'- gGCCUUgGCCGUGGCCGCCCUcaCCu- -3' miRNA: 3'- -UGGAAgUGGUACUGGCGGGGccGGug -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 74018 | 0.68 | 0.567256 |
Target: 5'- aACCga-ACCGgaGACCGCCCgCGGCgCAa -3' miRNA: 3'- -UGGaagUGGUa-CUGGCGGG-GCCG-GUg -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 78010 | 0.7 | 0.434879 |
Target: 5'- gGCCUUUcCCuu-ACCGCCCCuGuGCCACg -3' miRNA: 3'- -UGGAAGuGGuacUGGCGGGG-C-CGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 79213 | 0.66 | 0.697623 |
Target: 5'- gACCcggUUUACUGUua-CGCaCCCGGCCACg -3' miRNA: 3'- -UGG---AAGUGGUAcugGCG-GGGCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 79473 | 0.7 | 0.45276 |
Target: 5'- aGCCcagUCACCAcGACCcucugauCCCgGGCCACc -3' miRNA: 3'- -UGGa--AGUGGUaCUGGc------GGGgCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 79748 | 0.71 | 0.400382 |
Target: 5'- cACCacgUCugCAUGGCU-CCCgGGCCGCu -3' miRNA: 3'- -UGGa--AGugGUACUGGcGGGgCCGGUG- -5' |
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13136 | 3' | -60.4 | NC_003401.1 | + | 80036 | 1.07 | 0.001198 |
Target: 5'- uACCUUCACCAUGACCGCCCCGGCCACc -3' miRNA: 3'- -UGGAAGUGGUACUGGCGGGGCCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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