miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13136 3' -60.4 NC_003401.1 + 92958 0.67 0.587202
Target:  5'- gACgUUCACCAUGGuCaCGUCUCGGCUc- -3'
miRNA:   3'- -UGgAAGUGGUACU-G-GCGGGGCCGGug -5'
13136 3' -60.4 NC_003401.1 + 4800 0.68 0.57721
Target:  5'- aGCCUUUACCAUGaAUCGCUCaaaaugaGGCUuuACa -3'
miRNA:   3'- -UGGAAGUGGUAC-UGGCGGGg------CCGG--UG- -5'
13136 3' -60.4 NC_003401.1 + 74018 0.68 0.567256
Target:  5'- aACCga-ACCGgaGACCGCCCgCGGCgCAa -3'
miRNA:   3'- -UGGaagUGGUa-CUGGCGGG-GCCG-GUg -5'
13136 3' -60.4 NC_003401.1 + 132227 0.68 0.547485
Target:  5'- gGCCggCGCCGccGCCggGCCgCGGCCGCc -3'
miRNA:   3'- -UGGaaGUGGUacUGG--CGGgGCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 128521 0.69 0.507699
Target:  5'- cCCgggCACCuUGGCCGCCCUgacacuuGGCaCACu -3'
miRNA:   3'- uGGaa-GUGGuACUGGCGGGG-------CCG-GUG- -5'
13136 3' -60.4 NC_003401.1 + 21603 0.69 0.499126
Target:  5'- uGCagcUCGCCGUGGUCGCCgCGGCaCGCg -3'
miRNA:   3'- -UGga-AGUGGUACUGGCGGgGCCG-GUG- -5'
13136 3' -60.4 NC_003401.1 + 79473 0.7 0.45276
Target:  5'- aGCCcagUCACCAcGACCcucugauCCCgGGCCACc -3'
miRNA:   3'- -UGGa--AGUGGUaCUGGc------GGGgCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 133544 0.7 0.443769
Target:  5'- gGCCUcuccccCGCCcgGACCGCcgggcaCCCGGCC-Ca -3'
miRNA:   3'- -UGGAa-----GUGGuaCUGGCG------GGGCCGGuG- -5'
13136 3' -60.4 NC_003401.1 + 78010 0.7 0.434879
Target:  5'- gGCCUUUcCCuu-ACCGCCCCuGuGCCACg -3'
miRNA:   3'- -UGGAAGuGGuacUGGCGGGG-C-CGGUG- -5'
13136 3' -60.4 NC_003401.1 + 18305 0.71 0.408842
Target:  5'- gACCagaaaCGCCA-GAUCGCCCCgagcGGCCGCu -3'
miRNA:   3'- -UGGaa---GUGGUaCUGGCGGGG----CCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 89621 0.71 0.408842
Target:  5'- aACCgUCGCCAaccUGGCgGCCCUGGCauaUACg -3'
miRNA:   3'- -UGGaAGUGGU---ACUGgCGGGGCCG---GUG- -5'
13136 3' -60.4 NC_003401.1 + 79748 0.71 0.400382
Target:  5'- cACCacgUCugCAUGGCU-CCCgGGCCGCu -3'
miRNA:   3'- -UGGa--AGugGUACUGGcGGGgCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 119959 0.71 0.392034
Target:  5'- aGCCUcggUGCCGcUGcGCCGCCuCCGGCCAg -3'
miRNA:   3'- -UGGAa--GUGGU-AC-UGGCGG-GGCCGGUg -5'
13136 3' -60.4 NC_003401.1 + 125905 0.72 0.352032
Target:  5'- cGCCgucgaggcCGCCAgcagUGGCCGCCuuGGUCACc -3'
miRNA:   3'- -UGGaa------GUGGU----ACUGGCGGggCCGGUG- -5'
13136 3' -60.4 NC_003401.1 + 121516 0.72 0.352032
Target:  5'- cACCc-CACCG-GGCCGUCUCGGCCAg -3'
miRNA:   3'- -UGGaaGUGGUaCUGGCGGGGCCGGUg -5'
13136 3' -60.4 NC_003401.1 + 72488 0.74 0.274567
Target:  5'- gGCCUUgGCCGUGGCCGCCCUcaCCu- -3'
miRNA:   3'- -UGGAAgUGGUACUGGCGGGGccGGug -5'
13136 3' -60.4 NC_003401.1 + 132364 0.79 0.125015
Target:  5'- gGCCgcCGCCcccGGCCGCCCCGcGCCGCg -3'
miRNA:   3'- -UGGaaGUGGua-CUGGCGGGGC-CGGUG- -5'
13136 3' -60.4 NC_003401.1 + 80036 1.07 0.001198
Target:  5'- uACCUUCACCAUGACCGCCCCGGCCACc -3'
miRNA:   3'- -UGGAAGUGGUACUGGCGGGGCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.