miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13136 5' -57.9 NC_003401.1 + 88568 0.66 0.794714
Target:  5'- -cGCAACgagGUAACCGCCagauUCCGGUa-- -3'
miRNA:   3'- gaCGUUGg--CGUUGGCGG----AGGCCAcuu -5'
13136 5' -57.9 NC_003401.1 + 13505 0.66 0.794714
Target:  5'- cCUG-AACCGCGACCGCCUggcCCGcGa--- -3'
miRNA:   3'- -GACgUUGGCGUUGGCGGA---GGC-Cacuu -5'
13136 5' -57.9 NC_003401.1 + 82389 0.66 0.793802
Target:  5'- -cGCAcgacaggACCGCAACCGCCcCCGuaGAu -3'
miRNA:   3'- gaCGU-------UGGCGUUGGCGGaGGCcaCUu -5'
13136 5' -57.9 NC_003401.1 + 119900 0.66 0.776196
Target:  5'- -cGCAACCcucGCGGCCGCCgccgagUCGGUu-- -3'
miRNA:   3'- gaCGUUGG---CGUUGGCGGa-----GGCCAcuu -5'
13136 5' -57.9 NC_003401.1 + 132389 0.66 0.776196
Target:  5'- -gGCGGCCGCGGCCcggcggcggcGCCggCCGGg--- -3'
miRNA:   3'- gaCGUUGGCGUUGG----------CGGa-GGCCacuu -5'
13136 5' -57.9 NC_003401.1 + 79857 0.66 0.776196
Target:  5'- uUGCGGuuGCAGaCGCCUC-GGUGGc -3'
miRNA:   3'- gACGUUggCGUUgGCGGAGgCCACUu -5'
13136 5' -57.9 NC_003401.1 + 118351 0.66 0.766736
Target:  5'- -aGCGcCCGCGguGCCGCCgCCGGg--- -3'
miRNA:   3'- gaCGUuGGCGU--UGGCGGaGGCCacuu -5'
13136 5' -57.9 NC_003401.1 + 8668 0.66 0.766736
Target:  5'- -gGCuccGCgGCAAUCGCCacaCCGGUGGc -3'
miRNA:   3'- gaCGu--UGgCGUUGGCGGa--GGCCACUu -5'
13136 5' -57.9 NC_003401.1 + 109072 0.66 0.757155
Target:  5'- gUGCAGCCGCGaucucacgucGCCGUUUUUaGGUGGGu -3'
miRNA:   3'- gACGUUGGCGU----------UGGCGGAGG-CCACUU- -5'
13136 5' -57.9 NC_003401.1 + 10833 0.67 0.747461
Target:  5'- -cGCuuGCCGCGguuGCCGCCa-CGGUGGu -3'
miRNA:   3'- gaCGu-UGGCGU---UGGCGGagGCCACUu -5'
13136 5' -57.9 NC_003401.1 + 16349 0.67 0.737664
Target:  5'- aUGCAugggaggagGCCGCuGGCCaCC-CCGGUGAAc -3'
miRNA:   3'- gACGU---------UGGCG-UUGGcGGaGGCCACUU- -5'
13136 5' -57.9 NC_003401.1 + 48446 0.67 0.737664
Target:  5'- -cGCGGCCGUuGCCGCUagauugguccgaUCCGGUc-- -3'
miRNA:   3'- gaCGUUGGCGuUGGCGG------------AGGCCAcuu -5'
13136 5' -57.9 NC_003401.1 + 14363 0.67 0.7178
Target:  5'- -cGCGACCGCAAgcccgUCGCC-CCGGa--- -3'
miRNA:   3'- gaCGUUGGCGUU-----GGCGGaGGCCacuu -5'
13136 5' -57.9 NC_003401.1 + 72389 0.67 0.697638
Target:  5'- -cGCGcugGCaGCGAuuCCGCCUCUGGUGGu -3'
miRNA:   3'- gaCGU---UGgCGUU--GGCGGAGGCCACUu -5'
13136 5' -57.9 NC_003401.1 + 26690 0.68 0.687469
Target:  5'- aUGCAACCagGUAGCuCGCCUgaCCGG-GAAa -3'
miRNA:   3'- gACGUUGG--CGUUG-GCGGA--GGCCaCUU- -5'
13136 5' -57.9 NC_003401.1 + 16820 0.69 0.625784
Target:  5'- uUGCAcaacagccgcGCCGCAGCCuugaCCUCCGGaucgUGGAg -3'
miRNA:   3'- gACGU----------UGGCGUUGGc---GGAGGCC----ACUU- -5'
13136 5' -57.9 NC_003401.1 + 21830 0.69 0.605173
Target:  5'- gCUGgAAUCGCGGCCGCacgaCUCCGGg--- -3'
miRNA:   3'- -GACgUUGGCGUUGGCG----GAGGCCacuu -5'
13136 5' -57.9 NC_003401.1 + 33012 0.73 0.385873
Target:  5'- -cGCAACCuGCAACCGUggCUGGUGGGa -3'
miRNA:   3'- gaCGUUGG-CGUUGGCGgaGGCCACUU- -5'
13136 5' -57.9 NC_003401.1 + 119954 0.73 0.369321
Target:  5'- -cGguGCCGCugcGCCGCCUCCGGccaGAu -3'
miRNA:   3'- gaCguUGGCGu--UGGCGGAGGCCa--CUu -5'
13136 5' -57.9 NC_003401.1 + 80002 1.06 0.002362
Target:  5'- uCUGCAACCGCAACCGCCUCCGGUGAAg -3'
miRNA:   3'- -GACGUUGGCGUUGGCGGAGGCCACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.