miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13137 3' -56.1 NC_003401.1 + 120900 0.66 0.886481
Target:  5'- uGACGGGAcugcCAG-GUGCGUCCG-GCAa -3'
miRNA:   3'- -CUGCUCUa---GUCgCAUGCGGGCuCGUg -5'
13137 3' -56.1 NC_003401.1 + 98731 0.66 0.85691
Target:  5'- cGGCGGucuguaugucGGUUAGCGggGCGCUcucugCGAGCGCg -3'
miRNA:   3'- -CUGCU----------CUAGUCGCa-UGCGG-----GCUCGUG- -5'
13137 3' -56.1 NC_003401.1 + 15023 0.67 0.80648
Target:  5'- aGGCGGGAUUucCGUGCGCCac-GCGCg -3'
miRNA:   3'- -CUGCUCUAGucGCAUGCGGgcuCGUG- -5'
13137 3' -56.1 NC_003401.1 + 64390 0.68 0.759952
Target:  5'- uACGGGGUU-GCcgGUAcCGCCCGGGUACg -3'
miRNA:   3'- cUGCUCUAGuCG--CAU-GCGGGCUCGUG- -5'
13137 3' -56.1 NC_003401.1 + 79905 0.69 0.740466
Target:  5'- cGGCGGGA-CGG-GUACgaaguaGCCCGAGCAg -3'
miRNA:   3'- -CUGCUCUaGUCgCAUG------CGGGCUCGUg -5'
13137 3' -56.1 NC_003401.1 + 85642 0.69 0.72958
Target:  5'- uACGGacGGUCccgaaagGGCGUgaagcauuccGCGCCCGAGCAUg -3'
miRNA:   3'- cUGCU--CUAG-------UCGCA----------UGCGGGCUCGUG- -5'
13137 3' -56.1 NC_003401.1 + 117926 0.7 0.669721
Target:  5'- cGGCGGGGUCgcGGCGaggucACGCcgaaCCGGGCGCg -3'
miRNA:   3'- -CUGCUCUAG--UCGCa----UGCG----GGCUCGUG- -5'
13137 3' -56.1 NC_003401.1 + 110102 0.7 0.658384
Target:  5'- aGGCGGGG-CGGUccccgugugcaccGUGCGCCUGcAGCACg -3'
miRNA:   3'- -CUGCUCUaGUCG-------------CAUGCGGGC-UCGUG- -5'
13137 3' -56.1 NC_003401.1 + 123214 0.71 0.618059
Target:  5'- aACuGGAcCGGCGUGcCGCCCGAGCu- -3'
miRNA:   3'- cUGcUCUaGUCGCAU-GCGGGCUCGug -5'
13137 3' -56.1 NC_003401.1 + 132460 0.72 0.566657
Target:  5'- gGGgGAGGcCGGCG-GCGCCCGGcGCGCg -3'
miRNA:   3'- -CUgCUCUaGUCGCaUGCGGGCU-CGUG- -5'
13137 3' -56.1 NC_003401.1 + 128552 0.72 0.553449
Target:  5'- aGACGAGAcgguuugucgccgaUCGG-GUACcCCCGGGCACc -3'
miRNA:   3'- -CUGCUCU--------------AGUCgCAUGcGGGCUCGUG- -5'
13137 3' -56.1 NC_003401.1 + 124669 0.72 0.526331
Target:  5'- gGACGuGAUCAGCGUG-GCCau-GCACa -3'
miRNA:   3'- -CUGCuCUAGUCGCAUgCGGgcuCGUG- -5'
13137 3' -56.1 NC_003401.1 + 17648 0.73 0.496809
Target:  5'- cGGCGAGAacggCGGCGcGCGCUCGgagGGCACc -3'
miRNA:   3'- -CUGCUCUa---GUCGCaUGCGGGC---UCGUG- -5'
13137 3' -56.1 NC_003401.1 + 84168 1.1 0.001921
Target:  5'- cGACGAGAUCAGCGUACGCCCGAGCACa -3'
miRNA:   3'- -CUGCUCUAGUCGCAUGCGGGCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.