miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13137 5' -60.2 NC_003401.1 + 17994 0.66 0.663255
Target:  5'- -cGUCCCuGu-GCGCCGCgucauccgaaaacgGCCUCAc -3'
miRNA:   3'- ccCAGGGuCuuCGCGGCGa-------------CGGAGUa -5'
13137 5' -60.2 NC_003401.1 + 30653 0.67 0.628778
Target:  5'- aGGGgcgCUagAGAGGCG-CGUUGCCUCGg -3'
miRNA:   3'- -CCCa--GGg-UCUUCGCgGCGACGGAGUa -5'
13137 5' -60.2 NC_003401.1 + 37511 0.67 0.628778
Target:  5'- uGGGagCCCuGAAccGCGCCGCccGCCUUg- -3'
miRNA:   3'- -CCCa-GGGuCUU--CGCGGCGa-CGGAGua -5'
13137 5' -60.2 NC_003401.1 + 84221 0.68 0.548262
Target:  5'- cGGGUUagagCCGGGAaUGCCGCUGCC-CGc -3'
miRNA:   3'- -CCCAG----GGUCUUcGCGGCGACGGaGUa -5'
13137 5' -60.2 NC_003401.1 + 132676 0.68 0.535434
Target:  5'- cGGG-CCCGGGgggcgucggggcgcGGCGCCGCcgGgCUCGg -3'
miRNA:   3'- -CCCaGGGUCU--------------UCGCGGCGa-CgGAGUa -5'
13137 5' -60.2 NC_003401.1 + 20389 0.69 0.509144
Target:  5'- uGGUCCUgucaagAGAGGCGCgGUUGCCg--- -3'
miRNA:   3'- cCCAGGG------UCUUCGCGgCGACGGagua -5'
13137 5' -60.2 NC_003401.1 + 123526 0.69 0.499544
Target:  5'- gGGGUCCaggGGccGCGCCGCgGCCa--- -3'
miRNA:   3'- -CCCAGGg--UCuuCGCGGCGaCGGagua -5'
13137 5' -60.2 NC_003401.1 + 132423 0.7 0.408623
Target:  5'- gGGGUCCCGcGggGgGCCGggGCCg--- -3'
miRNA:   3'- -CCCAGGGU-CuuCgCGGCgaCGGagua -5'
13137 5' -60.2 NC_003401.1 + 132210 0.7 0.408623
Target:  5'- cGGG-CCCGGAggcgcccggccGGCGCCGCcGCCg--- -3'
miRNA:   3'- -CCCaGGGUCU-----------UCGCGGCGaCGGagua -5'
13137 5' -60.2 NC_003401.1 + 132274 0.71 0.366401
Target:  5'- aGGGUCCCccgcgcgccccccGGGcccgcgcgccgGGCGCCGCcgGCCUCc- -3'
miRNA:   3'- -CCCAGGG-------------UCU-----------UCGCGGCGa-CGGAGua -5'
13137 5' -60.2 NC_003401.1 + 84133 1.06 0.001317
Target:  5'- gGGGUCCCAGAAGCGCCGCUGCCUCAUc -3'
miRNA:   3'- -CCCAGGGUCUUCGCGGCGACGGAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.