miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13139 3' -53.4 NC_003401.1 + 88831 0.66 0.938292
Target:  5'- -cGGCCGGUUUAcGCGGaucGACCCUg -3'
miRNA:   3'- auUCGGUCAAAUaCGCUcgcCUGGGA- -5'
13139 3' -53.4 NC_003401.1 + 22835 0.67 0.92214
Target:  5'- --cGCCuGGUUUccGuCGAgGCGGGCCCg -3'
miRNA:   3'- auuCGG-UCAAAuaC-GCU-CGCCUGGGa -5'
13139 3' -53.4 NC_003401.1 + 76657 0.67 0.92214
Target:  5'- -cGGUCAGggacacgaGUG-GAGCGGACCCc -3'
miRNA:   3'- auUCGGUCaaa-----UACgCUCGCCUGGGa -5'
13139 3' -53.4 NC_003401.1 + 54167 0.67 0.910071
Target:  5'- ----gCAGUccaaacGCGAGCGGGCCCg -3'
miRNA:   3'- auucgGUCAaaua--CGCUCGCCUGGGa -5'
13139 3' -53.4 NC_003401.1 + 93877 0.67 0.910071
Target:  5'- aAGGCCGacg---GUGAGCGGACCa- -3'
miRNA:   3'- aUUCGGUcaaauaCGCUCGCCUGGga -5'
13139 3' -53.4 NC_003401.1 + 120355 0.68 0.882867
Target:  5'- gUGGGCCAGgagGUuaGAGaGGGCCCg -3'
miRNA:   3'- -AUUCGGUCaaaUAcgCUCgCCUGGGa -5'
13139 3' -53.4 NC_003401.1 + 101775 0.68 0.866234
Target:  5'- --cGCCAGUUUuuuuugcgcaucUGCGuGCGuGGCCCUc -3'
miRNA:   3'- auuCGGUCAAAu-----------ACGCuCGC-CUGGGA- -5'
13139 3' -53.4 NC_003401.1 + 58116 0.69 0.808146
Target:  5'- uUGAGCCAGUcag-GCGGGUGGGaaguuUCCUg -3'
miRNA:   3'- -AUUCGGUCAaauaCGCUCGCCU-----GGGA- -5'
13139 3' -53.4 NC_003401.1 + 132611 0.69 0.808146
Target:  5'- -cGGCCGGgcccgGCgGAGCGGcACCCg -3'
miRNA:   3'- auUCGGUCaaauaCG-CUCGCC-UGGGa -5'
13139 3' -53.4 NC_003401.1 + 132456 0.71 0.73595
Target:  5'- gAGGCCGGcggcgcccgGCGcGCGGGCCCg -3'
miRNA:   3'- aUUCGGUCaaaua----CGCuCGCCUGGGa -5'
13139 3' -53.4 NC_003401.1 + 90433 0.71 0.719485
Target:  5'- cGAGUUAGUUUAgGUGAGCG-ACCCg -3'
miRNA:   3'- aUUCGGUCAAAUaCGCUCGCcUGGGa -5'
13139 3' -53.4 NC_003401.1 + 132514 0.72 0.688085
Target:  5'- -cGGCCGGgggcgGCGGccGCGGGCCCg -3'
miRNA:   3'- auUCGGUCaaauaCGCU--CGCCUGGGa -5'
13139 3' -53.4 NC_003401.1 + 89037 1.06 0.005869
Target:  5'- uUAAGCCAGUUUAUGCGAGCGGACCCUc -3'
miRNA:   3'- -AUUCGGUCAAAUACGCUCGCCUGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.