miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13139 5' -55.3 NC_003401.1 + 23814 0.66 0.938031
Target:  5'- cGUGGGGgaaaGcgCgGCGccaccuGCCGGCCg -3'
miRNA:   3'- -CGUCCCag--CuaGgCGCauu---UGGCCGG- -5'
13139 5' -55.3 NC_003401.1 + 121375 0.66 0.933123
Target:  5'- gGUGGGGU-GGUCUGUGUGGcucACC-GCCu -3'
miRNA:   3'- -CGUCCCAgCUAGGCGCAUU---UGGcCGG- -5'
13139 5' -55.3 NC_003401.1 + 119961 0.66 0.922593
Target:  5'- aCAGGGUgGGcccgauggcgUCCGUugGUAAGaCGGCCu -3'
miRNA:   3'- cGUCCCAgCU----------AGGCG--CAUUUgGCCGG- -5'
13139 5' -55.3 NC_003401.1 + 88195 0.66 0.922593
Target:  5'- uGCuGGGUaacggaGGUUCGCugGAGCCGGUg -3'
miRNA:   3'- -CGuCCCAg-----CUAGGCGcaUUUGGCCGg -5'
13139 5' -55.3 NC_003401.1 + 117892 0.66 0.922593
Target:  5'- cGCGGGGguUCGG-CgGCGgugGcACCGcGCCa -3'
miRNA:   3'- -CGUCCC--AGCUaGgCGCa--UuUGGC-CGG- -5'
13139 5' -55.3 NC_003401.1 + 20761 0.66 0.922593
Target:  5'- cCAGGGcgCGGccCCGCGUuggggguuGgCGGCCg -3'
miRNA:   3'- cGUCCCa-GCUa-GGCGCAuu------UgGCCGG- -5'
13139 5' -55.3 NC_003401.1 + 122109 0.66 0.922593
Target:  5'- gGCAGGGggCGuggcacggCCGCGccAGCC-GCCg -3'
miRNA:   3'- -CGUCCCa-GCua------GGCGCauUUGGcCGG- -5'
13139 5' -55.3 NC_003401.1 + 69363 0.66 0.922593
Target:  5'- cGCGGGcGUCGAU-UGCGggAAACCaGCa -3'
miRNA:   3'- -CGUCC-CAGCUAgGCGCa-UUUGGcCGg -5'
13139 5' -55.3 NC_003401.1 + 69778 0.66 0.911109
Target:  5'- aGCGGGGaccguugcggCGGUUUcggcgaaggGCGgaGAGCCGGCCg -3'
miRNA:   3'- -CGUCCCa---------GCUAGG---------CGCa-UUUGGCCGG- -5'
13139 5' -55.3 NC_003401.1 + 28636 0.67 0.905013
Target:  5'- uGUAGGGUCuGGUCCGU--AAA-CGGCg -3'
miRNA:   3'- -CGUCCCAG-CUAGGCGcaUUUgGCCGg -5'
13139 5' -55.3 NC_003401.1 + 71462 0.67 0.892121
Target:  5'- aCGGGGaCGGUCgGUGUGcccAACCuGGCa -3'
miRNA:   3'- cGUCCCaGCUAGgCGCAU---UUGG-CCGg -5'
13139 5' -55.3 NC_003401.1 + 18148 0.67 0.892121
Target:  5'- uCGGGG-CGAUCUgGCGUuu-CUGGUCa -3'
miRNA:   3'- cGUCCCaGCUAGG-CGCAuuuGGCCGG- -5'
13139 5' -55.3 NC_003401.1 + 30371 0.67 0.892121
Target:  5'- cGguGGGgCGAUCUGgGUGugauuUgGGCCa -3'
miRNA:   3'- -CguCCCaGCUAGGCgCAUuu---GgCCGG- -5'
13139 5' -55.3 NC_003401.1 + 18650 0.67 0.885333
Target:  5'- cGgAGaGGUC--UCCGUGUcuGCCGGCa -3'
miRNA:   3'- -CgUC-CCAGcuAGGCGCAuuUGGCCGg -5'
13139 5' -55.3 NC_003401.1 + 48431 0.67 0.885333
Target:  5'- gGCAGcGGcaaGAUCCGCG---GCCGuuGCCg -3'
miRNA:   3'- -CGUC-CCag-CUAGGCGCauuUGGC--CGG- -5'
13139 5' -55.3 NC_003401.1 + 123519 0.67 0.878321
Target:  5'- -aGGGGcCGcgCCGCGgccAAACC-GCCu -3'
miRNA:   3'- cgUCCCaGCuaGGCGCa--UUUGGcCGG- -5'
13139 5' -55.3 NC_003401.1 + 106310 0.67 0.877607
Target:  5'- -gGGGGUaUGGUCCGggcaucaCGUAAAaCGGCCu -3'
miRNA:   3'- cgUCCCA-GCUAGGC-------GCAUUUgGCCGG- -5'
13139 5' -55.3 NC_003401.1 + 13682 0.68 0.863645
Target:  5'- uGUGGcGGUCGuccugaucguGUuuGCGcUAAACCGGCg -3'
miRNA:   3'- -CGUC-CCAGC----------UAggCGC-AUUUGGCCGg -5'
13139 5' -55.3 NC_003401.1 + 37068 0.68 0.863645
Target:  5'- cGCAauGGUCGGacuUCCGgG---ACCGGCCg -3'
miRNA:   3'- -CGUc-CCAGCU---AGGCgCauuUGGCCGG- -5'
13139 5' -55.3 NC_003401.1 + 123419 0.68 0.863645
Target:  5'- cCAGGGUUGuUCCGU-UGGGCCGGg- -3'
miRNA:   3'- cGUCCCAGCuAGGCGcAUUUGGCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.