miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1314 5' -56.7 NC_001331.1 + 5438 0.67 0.149158
Target:  5'- cGCuCGAUCa-GCGGAUCgCAcUCGACCUg -3'
miRNA:   3'- -UG-GCUAGggUGCCUAG-GUuGGCUGGG- -5'
1314 5' -56.7 NC_001331.1 + 4986 0.7 0.078447
Target:  5'- cGCuCGAUCCCACuGAUuuG-CCGuACCCg -3'
miRNA:   3'- -UG-GCUAGGGUGcCUAggUuGGC-UGGG- -5'
1314 5' -56.7 NC_001331.1 + 3956 0.71 0.0711
Target:  5'- aGCCGAUCaguugCCAgcUGGugaguUCCAgguGCCGGCCCg -3'
miRNA:   3'- -UGGCUAG-----GGU--GCCu----AGGU---UGGCUGGG- -5'
1314 5' -56.7 NC_001331.1 + 3901 0.66 0.168998
Target:  5'- --gGAUCCCACGGG-CCGGC--ACCUg -3'
miRNA:   3'- uggCUAGGGUGCCUaGGUUGgcUGGG- -5'
1314 5' -56.7 NC_001331.1 + 3301 0.66 0.168998
Target:  5'- uGCCGGUgCC--GGGUCCAagcgucgaGCCaGCCCa -3'
miRNA:   3'- -UGGCUAgGGugCCUAGGU--------UGGcUGGG- -5'
1314 5' -56.7 NC_001331.1 + 3228 0.73 0.044736
Target:  5'- gACCGGaagcggCCCACGcGG-CCGACCGcCCCa -3'
miRNA:   3'- -UGGCUa-----GGGUGC-CUaGGUUGGCuGGG- -5'
1314 5' -56.7 NC_001331.1 + 2939 0.66 0.173777
Target:  5'- aACC--UCCgGCGcGAUCCAggaugacGCCGugCCc -3'
miRNA:   3'- -UGGcuAGGgUGC-CUAGGU-------UGGCugGG- -5'
1314 5' -56.7 NC_001331.1 + 1978 1.04 0.000122
Target:  5'- gACCGAUCCCACGGAUCC-ACCGACCCg -3'
miRNA:   3'- -UGGCUAGGGUGCCUAGGuUGGCUGGG- -5'
1314 5' -56.7 NC_001331.1 + 1900 0.71 0.068802
Target:  5'- cACCGAUCCCuCcGAcCCGAaCGACCCc -3'
miRNA:   3'- -UGGCUAGGGuGcCUaGGUUgGCUGGG- -5'
1314 5' -56.7 NC_001331.1 + 1006 0.67 0.135694
Target:  5'- gUCGGcgCCCugGuGAUCCuggccgucGCCGGCCUg -3'
miRNA:   3'- uGGCUa-GGGugC-CUAGGu-------UGGCUGGG- -5'
1314 5' -56.7 NC_001331.1 + 320 0.66 0.158799
Target:  5'- uGCCG--CCCACGG--CCAGCaGAUCCa -3'
miRNA:   3'- -UGGCuaGGGUGCCuaGGUUGgCUGGG- -5'
1314 5' -56.7 NC_001331.1 + 300 0.68 0.118718
Target:  5'- gGCCGugggcggcaagCCgAUGGcgCCGACCG-CCCa -3'
miRNA:   3'- -UGGCua---------GGgUGCCuaGGUUGGCuGGG- -5'
1314 5' -56.7 NC_001331.1 + 209 0.72 0.054065
Target:  5'- aGCCGGUgCUcugcaaguucgccaGCGuGGUCCGcCCGACCCa -3'
miRNA:   3'- -UGGCUAgGG--------------UGC-CUAGGUuGGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.