miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13140 3' -54.3 NC_003401.1 + 72278 0.66 0.936396
Target:  5'- cCCGUGCagcguccauACGGGcacuGCGUCGaacGGACGGc -3'
miRNA:   3'- -GGCACG---------UGUUCu---CGCAGCa--CCUGCUu -5'
13140 3' -54.3 NC_003401.1 + 73370 0.66 0.931309
Target:  5'- cCCaGUGCGCAuucuuucucagcGGAGCGcCGacGGAUGAGg -3'
miRNA:   3'- -GG-CACGUGU------------UCUCGCaGCa-CCUGCUU- -5'
13140 3' -54.3 NC_003401.1 + 27122 0.67 0.908485
Target:  5'- gCCGUGUugGgucuuGGuGCGUaUGUGGugGAu -3'
miRNA:   3'- -GGCACGugU-----UCuCGCA-GCACCugCUu -5'
13140 3' -54.3 NC_003401.1 + 29223 0.67 0.902164
Target:  5'- cCCGUGUACGuugGGGGauaCGUGGACGu- -3'
miRNA:   3'- -GGCACGUGU---UCUCgcaGCACCUGCuu -5'
13140 3' -54.3 NC_003401.1 + 72392 0.67 0.902164
Target:  5'- aUCGUGUACAAG-GCGaUCGUGaGGCc-- -3'
miRNA:   3'- -GGCACGUGUUCuCGC-AGCAC-CUGcuu -5'
13140 3' -54.3 NC_003401.1 + 132795 0.67 0.894933
Target:  5'- cCCGgcgGCGCGgagaccaccuuucGGGGCGgCGUGGGgGAGg -3'
miRNA:   3'- -GGCa--CGUGU-------------UCUCGCaGCACCUgCUU- -5'
13140 3' -54.3 NC_003401.1 + 14219 0.67 0.888802
Target:  5'- cCCGgggGCGCuaGAGGGUGUCGgGGACc-- -3'
miRNA:   3'- -GGCa--CGUG--UUCUCGCAGCaCCUGcuu -5'
13140 3' -54.3 NC_003401.1 + 60971 0.69 0.817712
Target:  5'- uCCGaUGCcaaaguCAGGGGUGUCGUGGAUc-- -3'
miRNA:   3'- -GGC-ACGu-----GUUCUCGCAGCACCUGcuu -5'
13140 3' -54.3 NC_003401.1 + 43476 0.72 0.692048
Target:  5'- aUGUGCACAGGGGCGUgCGUGaGCu-- -3'
miRNA:   3'- gGCACGUGUUCUCGCA-GCACcUGcuu -5'
13140 3' -54.3 NC_003401.1 + 21597 0.72 0.661035
Target:  5'- -gGUGUuuuGgAGGGGCGUCGUGGAgGAGu -3'
miRNA:   3'- ggCACG---UgUUCUCGCAGCACCUgCUU- -5'
13140 3' -54.3 NC_003401.1 + 78157 0.74 0.537033
Target:  5'- aUCGUGCGCAcgagAGAGCaUgGUGGAUGGAa -3'
miRNA:   3'- -GGCACGUGU----UCUCGcAgCACCUGCUU- -5'
13140 3' -54.3 NC_003401.1 + 92366 1.08 0.004189
Target:  5'- aCCGUGCACAAGAGCGUCGUGGACGAAc -3'
miRNA:   3'- -GGCACGUGUUCUCGCAGCACCUGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.