miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13140 5' -54.9 NC_003401.1 + 15548 0.66 0.922097
Target:  5'- cCCCUCuGUUUCgcucagguccggGCGGCAgGGCUAagguGGGCAg -3'
miRNA:   3'- -GGGAG-CAAGG------------UGCUGU-CCGAU----CUCGU- -5'
13140 5' -54.9 NC_003401.1 + 16636 0.66 0.922097
Target:  5'- aCCUgGUgcUCCACGAUccggaggucaAGGCUGcGGCGc -3'
miRNA:   3'- gGGAgCA--AGGUGCUG----------UCCGAUcUCGU- -5'
13140 5' -54.9 NC_003401.1 + 84316 0.66 0.922097
Target:  5'- aCCUCucUCCacgcaguagGCGACAacGGCUGGAGUu -3'
miRNA:   3'- gGGAGcaAGG---------UGCUGU--CCGAUCUCGu -5'
13140 5' -54.9 NC_003401.1 + 16115 0.67 0.904201
Target:  5'- gUCUCGUagucgUCCgGCGuCAGGUUGGGGUg -3'
miRNA:   3'- gGGAGCA-----AGG-UGCuGUCCGAUCUCGu -5'
13140 5' -54.9 NC_003401.1 + 1624 0.68 0.862043
Target:  5'- gCCguagaCGUcCCGCGGCAGGUUAGcaAGUAg -3'
miRNA:   3'- gGGa----GCAaGGUGCUGUCCGAUC--UCGU- -5'
13140 5' -54.9 NC_003401.1 + 106094 0.68 0.85186
Target:  5'- aCCUCGUaacggcaacguacUCCAgUGGCGGGCcugcaaauuucgAGAGCAg -3'
miRNA:   3'- gGGAGCA-------------AGGU-GCUGUCCGa-----------UCUCGU- -5'
13140 5' -54.9 NC_003401.1 + 83529 0.68 0.846234
Target:  5'- gCCC-CGUUgCACGGCGcauGGCUcucuggucccggAGAGCGg -3'
miRNA:   3'- -GGGaGCAAgGUGCUGU---CCGA------------UCUCGU- -5'
13140 5' -54.9 NC_003401.1 + 118455 0.68 0.838026
Target:  5'- aCCCaacUCGggUCCGCGGgcccCGGGCUcgGGAGCc -3'
miRNA:   3'- -GGG---AGCa-AGGUGCU----GUCCGA--UCUCGu -5'
13140 5' -54.9 NC_003401.1 + 13505 0.68 0.838026
Target:  5'- aCCCUgaaaucuaUGUUCUcuauaaACGACAGGUUcAGGGCGa -3'
miRNA:   3'- -GGGA--------GCAAGG------UGCUGUCCGA-UCUCGU- -5'
13140 5' -54.9 NC_003401.1 + 63574 0.69 0.803359
Target:  5'- aCCUCGa-CCACGGgGGGC-GGGGCu -3'
miRNA:   3'- gGGAGCaaGGUGCUgUCCGaUCUCGu -5'
13140 5' -54.9 NC_003401.1 + 92331 1.11 0.00236
Target:  5'- aCCCUCGUUCCACGACAGGCUAGAGCAg -3'
miRNA:   3'- -GGGAGCAAGGUGCUGUCCGAUCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.