miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13141 3' -56.5 NC_003401.1 + 124848 0.66 0.906881
Target:  5'- aUgCUCUGUagcagggaGCAUAUGUgCAUGGCCa -3'
miRNA:   3'- gGgGAGGCAg-------CGUAUGUAgGUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 120302 0.66 0.906881
Target:  5'- -aCCUCCGuUUGUAU-CGUCCcauaGCaGGCCg -3'
miRNA:   3'- ggGGAGGC-AGCGUAuGUAGG----UG-CCGG- -5'
13141 3' -56.5 NC_003401.1 + 10670 0.66 0.900683
Target:  5'- aCCaCCaCCGUgGCG-GCAaCCGCGGCa -3'
miRNA:   3'- -GG-GGaGGCAgCGUaUGUaGGUGCCGg -5'
13141 3' -56.5 NC_003401.1 + 63216 0.66 0.900683
Target:  5'- -aCCUCCGccaaGCAUAUAgUCCGCGcCCu -3'
miRNA:   3'- ggGGAGGCag--CGUAUGU-AGGUGCcGG- -5'
13141 3' -56.5 NC_003401.1 + 91594 0.66 0.894258
Target:  5'- cCCCCgUCUGUCgGCucgGCAccgUCCuCGGCa -3'
miRNA:   3'- -GGGG-AGGCAG-CGua-UGU---AGGuGCCGg -5'
13141 3' -56.5 NC_003401.1 + 17988 0.66 0.894258
Target:  5'- aCCCCaaCGcCGagauaGUCCugGGCCa -3'
miRNA:   3'- -GGGGagGCaGCguaugUAGGugCCGG- -5'
13141 3' -56.5 NC_003401.1 + 23985 0.66 0.894258
Target:  5'- gCCCauuggCUGcCGCcaGCGUCCaAUGGCCg -3'
miRNA:   3'- gGGGa----GGCaGCGuaUGUAGG-UGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 54461 0.66 0.894258
Target:  5'- aCCCCUUaagCGUcUGCAUgCugGGCUu -3'
miRNA:   3'- -GGGGAGgcaGCGuAUGUAgGugCCGG- -5'
13141 3' -56.5 NC_003401.1 + 132290 0.66 0.880739
Target:  5'- cCCCCgggcCCG-CGCGccggGCG-CCGcCGGCCu -3'
miRNA:   3'- -GGGGa---GGCaGCGUa---UGUaGGU-GCCGG- -5'
13141 3' -56.5 NC_003401.1 + 114925 0.66 0.880739
Target:  5'- aCCCCa-CG-CGCGUACGUUUAUGGUUu -3'
miRNA:   3'- -GGGGagGCaGCGUAUGUAGGUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 119555 0.66 0.873653
Target:  5'- gCCUCUCUGUCGUcUGCcUCUAggUGGCg -3'
miRNA:   3'- -GGGGAGGCAGCGuAUGuAGGU--GCCGg -5'
13141 3' -56.5 NC_003401.1 + 88357 0.66 0.873653
Target:  5'- gCUCC-CCGUCGCcuc---CCACGGCg -3'
miRNA:   3'- -GGGGaGGCAGCGuauguaGGUGCCGg -5'
13141 3' -56.5 NC_003401.1 + 108988 0.66 0.873653
Target:  5'- -aCCUUCGUCGCugggACAgcCCAC-GCCg -3'
miRNA:   3'- ggGGAGGCAGCGua--UGUa-GGUGcCGG- -5'
13141 3' -56.5 NC_003401.1 + 132223 0.66 0.873653
Target:  5'- gCCCggCCGgCGCcgccGCcgggCCGCGGCCg -3'
miRNA:   3'- gGGGa-GGCaGCGua--UGua--GGUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 39934 0.67 0.858851
Target:  5'- gCCCCUCUccaGC--GCGUCCAC-GCCa -3'
miRNA:   3'- -GGGGAGGcagCGuaUGUAGGUGcCGG- -5'
13141 3' -56.5 NC_003401.1 + 80347 0.67 0.858851
Target:  5'- cCCCUUCCGUC-CGggAgGUCuaggCugGGCCa -3'
miRNA:   3'- -GGGGAGGCAGcGUa-UgUAG----GugCCGG- -5'
13141 3' -56.5 NC_003401.1 + 121771 0.67 0.851147
Target:  5'- aCCgCCgUCGUCGCAUA-AUCCAUcGCCc -3'
miRNA:   3'- -GG-GGaGGCAGCGUAUgUAGGUGcCGG- -5'
13141 3' -56.5 NC_003401.1 + 76973 0.67 0.851147
Target:  5'- gCCCUCguuuucgucagUGaUCGCGUACA-CCAggUGGCCg -3'
miRNA:   3'- gGGGAG-----------GC-AGCGUAUGUaGGU--GCCGG- -5'
13141 3' -56.5 NC_003401.1 + 21017 0.67 0.851147
Target:  5'- aCCCCg-CGUC-CGUu--UCCGCGGCUg -3'
miRNA:   3'- -GGGGagGCAGcGUAuguAGGUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 42191 0.67 0.843248
Target:  5'- gCCCagcgcgugCCgGUCGCGUuuaACGUCCcccCGGCCc -3'
miRNA:   3'- -GGGga------GG-CAGCGUA---UGUAGGu--GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.