miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13141 3' -56.5 NC_003401.1 + 1469 0.69 0.764621
Target:  5'- aCCUgCCG-CGgG-ACGUCUACGGCCa -3'
miRNA:   3'- gGGGaGGCaGCgUaUGUAGGUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 10670 0.66 0.900683
Target:  5'- aCCaCCaCCGUgGCG-GCAaCCGCGGCa -3'
miRNA:   3'- -GG-GGaGGCAgCGUaUGUaGGUGCCGg -5'
13141 3' -56.5 NC_003401.1 + 14068 0.73 0.526366
Target:  5'- aCCCUCUagCGCccccggGCGUCCGCGGUCu -3'
miRNA:   3'- gGGGAGGcaGCGua----UGUAGGUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 15547 0.7 0.716518
Target:  5'- cCCCCUCUGuuUCGCucAgGUCCggGCGGCa -3'
miRNA:   3'- -GGGGAGGC--AGCGuaUgUAGG--UGCCGg -5'
13141 3' -56.5 NC_003401.1 + 16376 0.69 0.726316
Target:  5'- cUCCCUCUuuaUCGCGUGCGacgguuauUCCGCGgaaGCCg -3'
miRNA:   3'- -GGGGAGGc--AGCGUAUGU--------AGGUGC---CGG- -5'
13141 3' -56.5 NC_003401.1 + 16852 0.78 0.292373
Target:  5'- gCCCCUCC-UCGUAUACcgcgugCgGCGGCCg -3'
miRNA:   3'- -GGGGAGGcAGCGUAUGua----GgUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 17756 0.78 0.299168
Target:  5'- gCCCCauucuUUCGUUGCGUAUuuucCCACGGCCa -3'
miRNA:   3'- -GGGG-----AGGCAGCGUAUGua--GGUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 17988 0.66 0.894258
Target:  5'- aCCCCaaCGcCGagauaGUCCugGGCCa -3'
miRNA:   3'- -GGGGagGCaGCguaugUAGGugCCGG- -5'
13141 3' -56.5 NC_003401.1 + 17993 0.68 0.818455
Target:  5'- gUCCCUgugCGcCGCGU-CAUCCgaaaACGGCCu -3'
miRNA:   3'- -GGGGAg--GCaGCGUAuGUAGG----UGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 21017 0.67 0.851147
Target:  5'- aCCCCg-CGUC-CGUu--UCCGCGGCUg -3'
miRNA:   3'- -GGGGagGCAGcGUAuguAGGUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 21776 0.68 0.783119
Target:  5'- gCCgUCCGcugCGCGUGCcgcggcgaCCACGGCg -3'
miRNA:   3'- gGGgAGGCa--GCGUAUGua------GGUGCCGg -5'
13141 3' -56.5 NC_003401.1 + 23885 0.72 0.585832
Target:  5'- uUCUCUCCGUCGUGauugACGUCCGCcGCg -3'
miRNA:   3'- -GGGGAGGCAGCGUa---UGUAGGUGcCGg -5'
13141 3' -56.5 NC_003401.1 + 23985 0.66 0.894258
Target:  5'- gCCCauuggCUGcCGCcaGCGUCCaAUGGCCg -3'
miRNA:   3'- gGGGa----GGCaGCGuaUGUAGG-UGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 30982 0.71 0.660598
Target:  5'- aCCCUgCGUUGCAUggcguuaucugugagGCuacuguaCCACGGCCc -3'
miRNA:   3'- gGGGAgGCAGCGUA---------------UGua-----GGUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 39934 0.67 0.858851
Target:  5'- gCCCCUCUccaGC--GCGUCCAC-GCCa -3'
miRNA:   3'- -GGGGAGGcagCGuaUGUAGGUGcCGG- -5'
13141 3' -56.5 NC_003401.1 + 42191 0.67 0.843248
Target:  5'- gCCCagcgcgugCCgGUCGCGUuuaACGUCCcccCGGCCc -3'
miRNA:   3'- -GGGga------GG-CAGCGUA---UGUAGGu--GCCGG- -5'
13141 3' -56.5 NC_003401.1 + 47314 0.68 0.795755
Target:  5'- gUCCC-CCGUCGCAUACGugauagcgcuuacaaUCCAaacacUGGUa -3'
miRNA:   3'- -GGGGaGGCAGCGUAUGU---------------AGGU-----GCCGg -5'
13141 3' -56.5 NC_003401.1 + 54461 0.66 0.894258
Target:  5'- aCCCCUUaagCGUcUGCAUgCugGGCUu -3'
miRNA:   3'- -GGGGAGgcaGCGuAUGUAgGugCCGG- -5'
13141 3' -56.5 NC_003401.1 + 61024 0.68 0.809849
Target:  5'- aUCCUacagggcaaGUaCGCGUACGUUCGCGGUCa -3'
miRNA:   3'- gGGGAgg-------CA-GCGUAUGUAGGUGCCGG- -5'
13141 3' -56.5 NC_003401.1 + 63216 0.66 0.900683
Target:  5'- -aCCUCCGccaaGCAUAUAgUCCGCGcCCu -3'
miRNA:   3'- ggGGAGGCag--CGUAUGU-AGGUGCcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.