miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13142 3' -50.9 NC_003401.1 + 98692 0.66 0.99255
Target:  5'- -gCGCGAUGUuacCCCACgauuugUugGCCg -3'
miRNA:   3'- uaGUGCUGCAcu-GGGUGaua---AugCGG- -5'
13142 3' -50.9 NC_003401.1 + 23822 0.66 0.99143
Target:  5'- aAUCGCGGCGUGGgggaaagCGCg---GCGCCa -3'
miRNA:   3'- -UAGUGCUGCACUgg-----GUGauaaUGCGG- -5'
13142 3' -50.9 NC_003401.1 + 18169 0.66 0.990182
Target:  5'- gGUCACgGGCGUGgcaccggaGCCC-CUAUU-CGUCg -3'
miRNA:   3'- -UAGUG-CUGCAC--------UGGGuGAUAAuGCGG- -5'
13142 3' -50.9 NC_003401.1 + 21314 0.66 0.990182
Target:  5'- cUCGCGGCGgucCCCGaagcccUGCGCCg -3'
miRNA:   3'- uAGUGCUGCacuGGGUgaua--AUGCGG- -5'
13142 3' -50.9 NC_003401.1 + 41098 0.66 0.987261
Target:  5'- -aCACGuCGU-ACCCACUacucuGUUAUGUCa -3'
miRNA:   3'- uaGUGCuGCAcUGGGUGA-----UAAUGCGG- -5'
13142 3' -50.9 NC_003401.1 + 43140 0.66 0.985569
Target:  5'- aGUCACGgaauACGcGGCCCGCcucacgGgaACGCCg -3'
miRNA:   3'- -UAGUGC----UGCaCUGGGUGa-----UaaUGCGG- -5'
13142 3' -50.9 NC_003401.1 + 43184 0.66 0.985569
Target:  5'- -gCGCGACG-GACCUGCag-UACGUg -3'
miRNA:   3'- uaGUGCUGCaCUGGGUGauaAUGCGg -5'
13142 3' -50.9 NC_003401.1 + 15185 0.66 0.985211
Target:  5'- cGUCGCG-CGUGGCgCACggaaauccCGCCu -3'
miRNA:   3'- -UAGUGCuGCACUGgGUGauaau---GCGG- -5'
13142 3' -50.9 NC_003401.1 + 119267 0.67 0.981678
Target:  5'- -gCGCGACGUGGCCaagguCguggcCGCCa -3'
miRNA:   3'- uaGUGCUGCACUGGgu---GauaauGCGG- -5'
13142 3' -50.9 NC_003401.1 + 41512 0.67 0.974161
Target:  5'- -cCACcuCGUGGCCCGCgAUUuucgagaGCGCCu -3'
miRNA:   3'- uaGUGcuGCACUGGGUGaUAA-------UGCGG- -5'
13142 3' -50.9 NC_003401.1 + 105199 0.68 0.97161
Target:  5'- gGUCACcgccAUGUGGCCCACccugGCgGCCg -3'
miRNA:   3'- -UAGUGc---UGCACUGGGUGauaaUG-CGG- -5'
13142 3' -50.9 NC_003401.1 + 16317 0.68 0.968569
Target:  5'- gGUCGCGAgGUGACCgcccguCACg---GCGCg -3'
miRNA:   3'- -UAGUGCUgCACUGG------GUGauaaUGCGg -5'
13142 3' -50.9 NC_003401.1 + 79222 0.69 0.954092
Target:  5'- -gCGCGAUugGACCCgguuuACUGUUACGCa -3'
miRNA:   3'- uaGUGCUGcaCUGGG-----UGAUAAUGCGg -5'
13142 3' -50.9 NC_003401.1 + 101758 0.69 0.954092
Target:  5'- cAUCuGCGuGCGUGGCCCucauugACGCCa -3'
miRNA:   3'- -UAG-UGC-UGCACUGGGugauaaUGCGG- -5'
13142 3' -50.9 NC_003401.1 + 91622 0.69 0.949867
Target:  5'- -gCGCGACGUucaACCCGUUGUUuuaaACGCCg -3'
miRNA:   3'- uaGUGCUGCAc--UGGGUGAUAA----UGCGG- -5'
13142 3' -50.9 NC_003401.1 + 13167 0.69 0.945391
Target:  5'- cGUCACGgagaugGCGUcGCCCACgaacUugGCCg -3'
miRNA:   3'- -UAGUGC------UGCAcUGGGUGaua-AugCGG- -5'
13142 3' -50.9 NC_003401.1 + 8958 0.7 0.930426
Target:  5'- cGUCAUGAUGaccCCCAUUAUcgACGCCu -3'
miRNA:   3'- -UAGUGCUGCacuGGGUGAUAa-UGCGG- -5'
13142 3' -50.9 NC_003401.1 + 32028 0.7 0.919155
Target:  5'- gGUCGCGACGUG-CUUACauugAUUugcaaACGCCa -3'
miRNA:   3'- -UAGUGCUGCACuGGGUGa---UAA-----UGCGG- -5'
13142 3' -50.9 NC_003401.1 + 50319 0.7 0.913744
Target:  5'- uUCACGuggguuACGUGGCCCACcaaaaacacguCGCCa -3'
miRNA:   3'- uAGUGC------UGCACUGGGUGauaau------GCGG- -5'
13142 3' -50.9 NC_003401.1 + 125383 0.74 0.765422
Target:  5'- -cCugGGCGUGAgauaCCCGCgcg-ACGCCa -3'
miRNA:   3'- uaGugCUGCACU----GGGUGauaaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.