miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13142 5' -47 NC_003401.1 + 26682 0.66 0.999593
Target:  5'- ------aCCGCGGCAAAaaacGUGUGuuUGCUa -3'
miRNA:   3'- uuuuguaGGUGCCGUUU----CACAU--ACGG- -5'
13142 5' -47 NC_003401.1 + 82802 0.66 0.999487
Target:  5'- uGAAuCGUCCaACGGCAucc-GUGUGCUc -3'
miRNA:   3'- -UUUuGUAGG-UGCCGUuucaCAUACGG- -5'
13142 5' -47 NC_003401.1 + 47924 0.66 0.999487
Target:  5'- --uGCGUCCagauGCaGCGAaccaAGUGUGUGCa -3'
miRNA:   3'- uuuUGUAGG----UGcCGUU----UCACAUACGg -5'
13142 5' -47 NC_003401.1 + 63691 0.66 0.999487
Target:  5'- --cACGUUacaaGCGGC--GGUGUucGUGCCg -3'
miRNA:   3'- uuuUGUAGg---UGCCGuuUCACA--UACGG- -5'
13142 5' -47 NC_003401.1 + 12966 0.66 0.999342
Target:  5'- -cAGCGUaaUACGGCGAuauacgggcggccGGUGUcgGCCa -3'
miRNA:   3'- uuUUGUAg-GUGCCGUU-------------UCACAuaCGG- -5'
13142 5' -47 NC_003401.1 + 24459 0.67 0.999265
Target:  5'- uAAAAC-UCCAacUGGCAAGGUGgacugguuagcgGCCa -3'
miRNA:   3'- -UUUUGuAGGU--GCCGUUUCACaua---------CGG- -5'
13142 5' -47 NC_003401.1 + 94927 0.67 0.999009
Target:  5'- --uACAUCaucgauuuuaACGGCAacgagcuaGAGUGUuUGCCa -3'
miRNA:   3'- uuuUGUAGg---------UGCCGU--------UUCACAuACGG- -5'
13142 5' -47 NC_003401.1 + 64081 0.67 0.998781
Target:  5'- uGGugGUCCGCGGCccguugcGGUGguuacugGCCa -3'
miRNA:   3'- uUUugUAGGUGCCGuu-----UCACaua----CGG- -5'
13142 5' -47 NC_003401.1 + 94691 0.67 0.998781
Target:  5'- -uGGCGUCCAaggacUGGCcGAcGUGUuUGCCg -3'
miRNA:   3'- uuUUGUAGGU-----GCCGuUU-CACAuACGG- -5'
13142 5' -47 NC_003401.1 + 123787 0.67 0.998511
Target:  5'- gGAGACGcgguuUCC-UGGCGAcaccccGGUGUAUGCa -3'
miRNA:   3'- -UUUUGU-----AGGuGCCGUU------UCACAUACGg -5'
13142 5' -47 NC_003401.1 + 27969 0.67 0.998192
Target:  5'- uGGACAgcgCCAUGaCGuccuuGUGUAUGCCg -3'
miRNA:   3'- uUUUGUa--GGUGCcGUuu---CACAUACGG- -5'
13142 5' -47 NC_003401.1 + 126589 0.67 0.998192
Target:  5'- --uGCAuaguUCCuugcaGGCAAacAGUGUGUGCUg -3'
miRNA:   3'- uuuUGU----AGGug---CCGUU--UCACAUACGG- -5'
13142 5' -47 NC_003401.1 + 3961 0.67 0.998192
Target:  5'- --cACAUUCACGGgGGAGauaAUGCCu -3'
miRNA:   3'- uuuUGUAGGUGCCgUUUCacaUACGG- -5'
13142 5' -47 NC_003401.1 + 83872 0.68 0.99687
Target:  5'- gAGGGCAUCuacguaCACGGCAacgaaaccgGAGUGUAcGUCg -3'
miRNA:   3'- -UUUUGUAG------GUGCCGU---------UUCACAUaCGG- -5'
13142 5' -47 NC_003401.1 + 30866 0.68 0.995606
Target:  5'- cGGACAUCCGCGuaAAAGUcuuGUGUGaUCg -3'
miRNA:   3'- uUUUGUAGGUGCcgUUUCA---CAUAC-GG- -5'
13142 5' -47 NC_003401.1 + 90596 0.69 0.994833
Target:  5'- cAAGAauaGUCUugGG---GGUGUGUGCCu -3'
miRNA:   3'- -UUUUg--UAGGugCCguuUCACAUACGG- -5'
13142 5' -47 NC_003401.1 + 18561 0.69 0.993954
Target:  5'- -cGGCAcgCCACGGUAcagcucccuGGUGUggGCCg -3'
miRNA:   3'- uuUUGUa-GGUGCCGUu--------UCACAuaCGG- -5'
13142 5' -47 NC_003401.1 + 95273 0.69 0.992636
Target:  5'- aGGAGCGgugucacaaccuguUUCAgGGCGu-GUGUGUGCCg -3'
miRNA:   3'- -UUUUGU--------------AGGUgCCGUuuCACAUACGG- -5'
13142 5' -47 NC_003401.1 + 18425 0.7 0.987602
Target:  5'- gGGGugGUCU-CGGCGGAGUGUcacGUGUCc -3'
miRNA:   3'- -UUUugUAGGuGCCGUUUCACA---UACGG- -5'
13142 5' -47 NC_003401.1 + 86947 0.7 0.983951
Target:  5'- cAAACGUCC-CGGaCAccuGUGuUGUGCCg -3'
miRNA:   3'- uUUUGUAGGuGCC-GUuu-CAC-AUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.