miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13144 3' -53.9 NC_003401.1 + 80273 0.66 0.950919
Target:  5'- cCCACagaccacgGGGUCguaGUCGCCAGCa -3'
miRNA:   3'- aGGUGgauaga--CCUAG---UAGCGGUCGc -5'
13144 3' -53.9 NC_003401.1 + 53011 0.66 0.943858
Target:  5'- cUCUACCggUGUCUGcuGUCGUgCGCCGGgGg -3'
miRNA:   3'- -AGGUGG--AUAGACc-UAGUA-GCGGUCgC- -5'
13144 3' -53.9 NC_003401.1 + 19120 0.66 0.928909
Target:  5'- gCCGCCUgAUCaUGGA-CAaCGaCCAGCGc -3'
miRNA:   3'- aGGUGGA-UAG-ACCUaGUaGC-GGUCGC- -5'
13144 3' -53.9 NC_003401.1 + 21186 0.67 0.911705
Target:  5'- gUCCGCCgacaugggccUCgGGGUCccguuuaacAUCGCCAGCu -3'
miRNA:   3'- -AGGUGGau--------AGaCCUAG---------UAGCGGUCGc -5'
13144 3' -53.9 NC_003401.1 + 121867 0.67 0.905472
Target:  5'- gUCACCUcaaaacacGUCaGGGUCGUCcCCGGCa -3'
miRNA:   3'- aGGUGGA--------UAGaCCUAGUAGcGGUCGc -5'
13144 3' -53.9 NC_003401.1 + 54224 0.67 0.904835
Target:  5'- -gCGCCUcgCcUGGAUgcagcaaCGUCGCCAGUa -3'
miRNA:   3'- agGUGGAuaG-ACCUA-------GUAGCGGUCGc -5'
13144 3' -53.9 NC_003401.1 + 58322 0.68 0.87068
Target:  5'- aCCGCCUGUUggcaaaaagggUGGGUaagauaccCGCCAGCGc -3'
miRNA:   3'- aGGUGGAUAG-----------ACCUAgua-----GCGGUCGC- -5'
13144 3' -53.9 NC_003401.1 + 118569 0.69 0.830299
Target:  5'- gCCACCgaggaugcgGUCaaUGGGUCGaaccCGCCGGCGu -3'
miRNA:   3'- aGGUGGa--------UAG--ACCUAGUa---GCGGUCGC- -5'
13144 3' -53.9 NC_003401.1 + 118899 0.69 0.812768
Target:  5'- gCCACCUGUUUGGuuguGUCAUC-CCAuguGCGc -3'
miRNA:   3'- aGGUGGAUAGACC----UAGUAGcGGU---CGC- -5'
13144 3' -53.9 NC_003401.1 + 29615 0.7 0.80374
Target:  5'- aCCACgaGccCUGGGUCAgguuguUCGCCGGCa -3'
miRNA:   3'- aGGUGgaUa-GACCUAGU------AGCGGUCGc -5'
13144 3' -53.9 NC_003401.1 + 118864 0.71 0.746476
Target:  5'- gCgGCCgguUCUGGGgaaauuUCcgCGCCAGCGg -3'
miRNA:   3'- aGgUGGau-AGACCU------AGuaGCGGUCGC- -5'
13144 3' -53.9 NC_003401.1 + 77897 0.72 0.654142
Target:  5'- aCCGCgU-UCUGGAUCGagaUCGCgAGCGg -3'
miRNA:   3'- aGGUGgAuAGACCUAGU---AGCGgUCGC- -5'
13144 3' -53.9 NC_003401.1 + 27577 0.74 0.576745
Target:  5'- gUCCGCau-UCUGGAUCGaggggcgggcacgCGCCAGCGc -3'
miRNA:   3'- -AGGUGgauAGACCUAGUa------------GCGGUCGC- -5'
13144 3' -53.9 NC_003401.1 + 102975 1.1 0.00307
Target:  5'- gUCCACCUAUCUGGAUCAUCGCCAGCGg -3'
miRNA:   3'- -AGGUGGAUAGACCUAGUAGCGGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.