miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13144 5' -55.5 NC_003401.1 + 20611 0.66 0.908396
Target:  5'- cGCGg-GGCcGCGCCcuGGAAcGCGGUUCc -3'
miRNA:   3'- aCGCgaCCGcUGCGG--CCUU-UGCUAAG- -5'
13144 5' -55.5 NC_003401.1 + 48685 0.66 0.908396
Target:  5'- aGCGCUuggguaaaGGCGGCGCUGuuucgcAACGAUa- -3'
miRNA:   3'- aCGCGA--------CCGCUGCGGCcu----UUGCUAag -5'
13144 5' -55.5 NC_003401.1 + 38116 0.66 0.9021
Target:  5'- cGUGCUGGUcucuCGCCGGuaccuuCGAgUCa -3'
miRNA:   3'- aCGCGACCGcu--GCGGCCuuu---GCUaAG- -5'
13144 5' -55.5 NC_003401.1 + 60847 0.66 0.895563
Target:  5'- gGCGC-GGUgucgagcaccuGACGCCGGAAuucaaACGGUc- -3'
miRNA:   3'- aCGCGaCCG-----------CUGCGGCCUU-----UGCUAag -5'
13144 5' -55.5 NC_003401.1 + 88852 0.66 0.888791
Target:  5'- gGCGCgGGUGGCGUCucuGACGAUg- -3'
miRNA:   3'- aCGCGaCCGCUGCGGccuUUGCUAag -5'
13144 5' -55.5 NC_003401.1 + 43321 0.66 0.888791
Target:  5'- cGCGCUGGUcgccGGCGuucCCGuGAGGCGGg-- -3'
miRNA:   3'- aCGCGACCG----CUGC---GGC-CUUUGCUaag -5'
13144 5' -55.5 NC_003401.1 + 119833 0.66 0.888791
Target:  5'- cGCGCaGGCGGcCGCCaccaGGGACGGg-- -3'
miRNA:   3'- aCGCGaCCGCU-GCGGc---CUUUGCUaag -5'
13144 5' -55.5 NC_003401.1 + 132385 0.66 0.881786
Target:  5'- cGCGCc-GCG-CGCCGGGccgcuuuCGGUUCg -3'
miRNA:   3'- aCGCGacCGCuGCGGCCUuu-----GCUAAG- -5'
13144 5' -55.5 NC_003401.1 + 42333 0.66 0.881786
Target:  5'- cGCGCUGG----GCCGGcAGGCGcgUCa -3'
miRNA:   3'- aCGCGACCgcugCGGCC-UUUGCuaAG- -5'
13144 5' -55.5 NC_003401.1 + 30333 0.67 0.874554
Target:  5'- gUGCGUaucuaGCGGCGCUGGAGGCa---- -3'
miRNA:   3'- -ACGCGac---CGCUGCGGCCUUUGcuaag -5'
13144 5' -55.5 NC_003401.1 + 11088 0.67 0.867098
Target:  5'- cGCGCUGGCccaguguuucgaGGCgGCCGG-AAUGcUUCc -3'
miRNA:   3'- aCGCGACCG------------CUG-CGGCCuUUGCuAAG- -5'
13144 5' -55.5 NC_003401.1 + 112272 0.67 0.859426
Target:  5'- cGCGCUcGGCGAagauucCGCCaGGAAaaacaGCGAg-- -3'
miRNA:   3'- aCGCGA-CCGCU------GCGG-CCUU-----UGCUaag -5'
13144 5' -55.5 NC_003401.1 + 106043 0.67 0.851542
Target:  5'- aGgGCU--CGACGUCGGGGACGcAUUCc -3'
miRNA:   3'- aCgCGAccGCUGCGGCCUUUGC-UAAG- -5'
13144 5' -55.5 NC_003401.1 + 23550 0.67 0.843454
Target:  5'- gGCGCUGGCGAagauagugGCCGcaGAGcACGGguUUCg -3'
miRNA:   3'- aCGCGACCGCUg-------CGGC--CUU-UGCU--AAG- -5'
13144 5' -55.5 NC_003401.1 + 108308 0.67 0.840989
Target:  5'- aGCGUcgucgugcccuguuUGGCGuCGCCGGAcugcGCGAc-- -3'
miRNA:   3'- aCGCG--------------ACCGCuGCGGCCUu---UGCUaag -5'
13144 5' -55.5 NC_003401.1 + 119100 0.67 0.835169
Target:  5'- gUGCGUUGGCGGCcacgaccuugGCCacgucgcgccuGGAGACGGc-- -3'
miRNA:   3'- -ACGCGACCGCUG----------CGG-----------CCUUUGCUaag -5'
13144 5' -55.5 NC_003401.1 + 108137 0.68 0.826694
Target:  5'- cGCGCaguccGGCGACGCCaaacaGGgcACGAc-- -3'
miRNA:   3'- aCGCGa----CCGCUGCGG-----CCuuUGCUaag -5'
13144 5' -55.5 NC_003401.1 + 127698 0.68 0.818036
Target:  5'- aGCGCUGGUugccauCGCCGucAACgGGUUCa -3'
miRNA:   3'- aCGCGACCGcu----GCGGCcuUUG-CUAAG- -5'
13144 5' -55.5 NC_003401.1 + 80828 0.68 0.818036
Target:  5'- gGCGUagagcugGGCGACuCCGGAccaGAUUCa -3'
miRNA:   3'- aCGCGa------CCGCUGcGGCCUuugCUAAG- -5'
13144 5' -55.5 NC_003401.1 + 122568 0.68 0.809206
Target:  5'- cGCGCU-GCG-CGgCGGAAcagacuuuccGCGGUUCg -3'
miRNA:   3'- aCGCGAcCGCuGCgGCCUU----------UGCUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.